Job Description Q62077 Confidence 97.66% Date Tue Jul 30 13:20:18 BST 2013 Rank 334 Aligned Residues 156 % Identity 13% Template c1s1eA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:kv channel interacting protein 1; PDBTitle: crystal structure of kv channel-interacting protein 12 (kchip-1) Resolution 2.30 Å

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		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		G	L	T	W	L	M	E	D	T	L	Q	A	A	T	P	L	Q	I	E	R	W	L	R	K	Q	F	Y	S	V	D	R	N	R	E	D	R	I	S	A	K	D	L	K	N	M	L	S	Q	V	N	Y	R	V	P	N	M	R	F	.	L
Query Conservation																																																												.
Alig confidence																				.	.	.						.	.																															.
Template Conservation																				.	.	.						.	.
Template Sequence		G	L	E	Q	L	E	A	Q	T	N	F	T	K	R	E	L	Q	V	.	.	.	L	Y	R	G	F	.	.	K	N	E	C	P	S	G	V	V	N	E	E	T	F	K	Q	I	Y	A	Q	F	F	P	H	G	D	A	S	T	Y	A	H
Template Known Secondary structure										S	S									.	.	.						.	.					T	T	S		B											T	T		T	T	S
Template Predicted Secondary structure																				.	.	.						.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	R	L	T	D	L	E	Q	R	S	G	D	I	T	Y	G	Q	F	A	Q	L	Y	R	S	L	M	Y	S	A	Q	K	T	M	D	L	P	F	L	E	T	N	A	L	R	T	G	E	R	P	E	H	C	Q	V	S	L	S	E	F
Query Conservation
Alig confidence																																													.	.	.	.	.
Template Conservation																																													.	.	.	.	.
Template Sequence		Y	L	F	N	A	F	D	T	T	Q	T	G	S	V	K	F	E	D	F	V	T	A	L	S	I	L	L	R	G	T	V	H	E	K	L	R	W	T	F	N	L	Y	D	.	.	.	.	.	I	N	K	D	G	Y	I	N	K	E	E	M
Template Known Secondary structure									T	T		S	S		B																														.	.	.	.	.	T	T			S
Template Predicted Secondary structure																																													.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.
		255	.	.	.	.	260										.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	F	L	L	E	.	.	.	.	.	.	.	.	.	Y	Q	G	E	L	W	A	V	D	R	L	Q	V	Q	E	F	M	L	S	F	L	R	D	P	L	R	E	I	E	E	P	Y	F	F	L	D	E	L	V	T	F	L	F	S	K
Query Conservation								.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		M	D	I	V	K	A	I	Y	D	M	M	G	K	Y	T	Y	P	V	L	K	E	D	T	P	R	Q	H	V	D	V	F	F	Q	K	M	.	.	.	.	.	D	K	N	K	D	G	I	V	T	L	D	E	F	L	E	S	C	Q	E	D
Template Known Secondary structure													T	T				G	G	G		S	S	S													.	.	.	.	.		T	T		S	S													T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		306
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		203

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D