Job Description Q8CFU8 Confidence 31.39% Date Tue Jul 30 12:57:00 BST 2013 Rank 6 Aligned Residues 71 % Identity 15% Template c3qsqA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:capsid polyprotein; PDBTitle: crystal structure of the projection domain of the human astrovirus2 capsid protein Resolution 1.80 Å Model Dimensions (Å) X:40.769 Y:39.606 Z:32.647

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure								.																.	.	.	.
Query SS confidence								.																.	.	.	.
Query Sequence		S	L	F	F	N	T	.	P	A	P	P	E	D	S	N	C	P	G	A	F	V	S	.	.	.	.	E	E	D	E	V	D	G	W	L	I	I	D	L	Q	D	S	Y	T	A	P	P	D	P	G	A	S	P	A	P	A	G	R	P	P
Query Conservation								.																.	.	.	.
Alig confidence								.																.	.	.	.
Template Conservation
Template Sequence		S	Y	F	I	R	G	A	E	S	G	S	N	V	S	N	L	K	I	R	D	Q	T	Y	H	T	P	L	Q	F	T	Q	G	K	W	Y	L	L	T	S	T	V	M	H	D	G	P	T	S	S	G	W	V	W	M	N	Q	E	L	T	N
Template Known Secondary structure										S	T	T					B				S	S										T	T													S	S				S										T
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		62	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		P	A	P	S	L	M	D	E	.	.	S	W	F	V	T	P	P	A
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		N	I	A	Y	R	V	D	P	G	M	M	Y	L	I	T	P	P	P
Template Known Secondary structure		T			B				T	T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D