Job Description A2A690 Confidence 96.83% Date Tue Jul 30 13:13:22 BST 2013 Rank 114 Aligned Residues 198 % Identity 23% Template c4b4tK_ PDB info PDB header:hydrolase Chain: K: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome Resolution 7.40 Å

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		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	V	L	L	Y	G	P	P	G	T	G	K	T	M	L	V	K	A	V	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S		T	T	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	K	A	A	F	I	R	V	N	G	S	E	F	V	H	K	Y	L	G	E	G	P	R	M	V	R	D	V	F	R	L	A	R	E	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T								G	G	G	T			S	S		S																.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template SS confidence
																									229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	P	S	I	I	F	I	D	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																				264	.	.	.	.	.	270	.	.	.
		544	.	.	.									.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570		.	.	.	.	.	.	.	.	.	580	.					.	.	.	.	.	.	.	.	590
Predicted Secondary structure						.	.	.	.	.	.	.	.																								.												.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.																								.												.	.	.	.
Query Sequence		L	N	E	A	.	.	.	.	.	.	.	.	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N	F	P	.	S	W	L	K	L	I	V	T	V	R	T	.	.	.	.	S	L	Q	E	I	T	K	L	L
Query Conservation						.	.	.	.	.	.	.	.																								.												.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																								.												.	.	.	.
Template Conservation
Template Sequence		V	D	S	I	A	T	K	R	F	D	A	Q	T	G	S	D	R	E	V	Q	R	I	L	I	E	L	L	T	Q	M	D	G	F	D	Q	S	T	N	V	K	V	I	M	A	T	N	R	A	D	T	L	D	P	A	L	L	R	P	G	R
Template Known Secondary structure		T						S		S	S	S		S																				S		S	S		S								S		S	S	S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K	M	D	N	T	T	F	G	K	L	S	S	H	L	K	T	L	S
Query Conservation
Alig confidence																		.												.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template Conservation																		.												.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template Sequence		L	D	R	K	I	E	F	P	S	L	R	D	R	R	E	R	.	R	L	I	F	G	T	I	A	S	K	M	.	.	.	.	.	.	.	.	.	.	S	L	A	P	E	A	D	.	.	.	.	.	.	.	L	D	S	L	I	I	R	N
Template Known Secondary structure										S	S							.										S	S	.	.	.	.	.	.	.	.	.	.		B		T	T			.	.	.	.	.	.	.								T
Template Predicted Secondary structure																		.												.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360											.	.	.	.	.	.	.								.	.	370	.	.	.	.	.
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.			.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		Q	G	S	Y	L	Y	L	K	L	T	F	D	L	I	E	K	.	.	G	Y	L	V	L	K	S	S	S	Y	K	V	V	P	V	S	L	S	E	V	Y	L	L	Q	C	N	M	K	F
Query Conservation																		.	.
Alig confidence				.	.	.												.	.
Template Conservation				.	.	.
Template Sequence		D	S	.	.	.	L	S	G	A	V	I	A	A	I	M	Q	E	A	G	L	R	A	V	R	K	N	R	Y	V	I	L	Q	S	D	L	E	E	A	Y	A	T	Q	V	K	T	D	N
Template Known Secondary structure		T	T	.	.	.																				T	T		S	S	B													S		S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		376	.				.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D