Job Description A2A690 Confidence 92.02% Date Tue Jul 30 13:13:22 BST 2013 Rank 341 Aligned Residues 240 % Identity 17% Template c4akgB_ PDB info PDB header:motor protein Chain: B: PDB Molecule:glutathione s-transferase class-mu 26 kda isozyme, dynein PDBTitle: dynein motor domain - atp complex Resolution 3.30 Å

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		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	I	I	L	C	G	P	P	G	S	G	K	T	M	I	M	N	N	A	L	R	N	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	S	S													S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2412	.	.	.	.	.	.	.	2420	.	.	.	.	.	.	.	.	.	2430	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	D	V	V	G	I	N	F	.	.	.	.	.	S	K	D	T	T	T	E	H	I	L	S	A	L	H	R	H	T	N	Y	V	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									.	.	.	.	.		T	T												T	T	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template SS confidence
																											2437	.	.	2440	.	.	.	.	.						.	.	.	.	2450	.	.	.	.	.	.	.	.	.	2460	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	K	G	L	T	L	L	P	K	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	N	L	V	L	F	C	D	E
Template Known Secondary structure			T	T	T						B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S								T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2467	.	.	2470	.	.	.	.	.	.	.	.																																							.	2480	.	.	.	.	.	.	.	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.													.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N	F	P	S	W	.	.	.	.	.	.	.	.	.	.	.	.	L	K	L	I	V	T	V	R	T	S	L	Q	E	I	T	K	L	L	P
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		I	N	L	P	K	L	D	K	Y	G	S	Q	N	V	V	.	L	F	L	R	Q	L	M	E	K	Q	G	F	W	K	T	P	E	N	K	W	V	T	I	E	R	I	H	I	V	G	A	C	N	P	P	T	D	P	G	R	I	P	M	S
Template Known Secondary structure		T	T		S				S	S	S						.									T	S					T	T	T								S										T	T	S	T	T
Template Predicted Secondary structure																	.
Template SS confidence
		2489	2490	.	.	.	.	.	.	.	.	.	2500	.	.	.		.	.	.	.	.	.	2510	.	.	.	.	.	.	.	.	.	2520	.	.	.	.	.	.	.	.	.	2530	.	.	.	.	.	.	.	.	.	2540	.	.	.	.	.	.	.
								592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K	M	D	N	T	T	F	G	K	L	S	S	H
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																.
Template Conservation																							.
Template Sequence		E	R	F	T	R	H	A	A	I	L	Y	L	G	Y	P	S	G	K	S	L	S	.	Q	I	Y	E	I	Y	Y	K	A	I	F	K	L	V	P	E	F	R	S	Y	T	E	P	F	A	R	A	S	V	H	L	Y	N	E	C	K	A	R
Template Known Secondary structure						T	T										T	T	T				.											T	T	S		G	G	G	G	G	G
Template Predicted Secondary structure																							.
Template SS confidence
		2548	.	2550	.	.	.	.	.	.	.	.	.	2560	.	.	.	.	.	.	.	.		.	2570	.	.	.	.	.	.	.	.	.	2580	.	.	.	.	.	.	.	.	.	2590	.	.	.	.	.	.	.	.	.	2600	.	.	.	.	.	.
		646	.	.	.	650	.									.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.
Query Sequence		L	K	T	L	S	Q	.	.	.	.	.	.	.	.	G	S	Y	L	Y	L	K	L	T	F	D	L	I	E	K	G	Y	L	V	L	K	S	S	S	Y	K	V	V	P	V	S	L	S	E	V	Y	L	L	Q	C	N	M	K	F	P	T
Query Conservation								.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																													.	.	.														.
Template Conservation																																												.	.	.														.
Template Sequence		Y	S	T	G	L	Q	S	H	Y	L	F	S	P	R	E	L	T	R	L	V	R	G	V	Y	T	A	I	N	T	G	P	R	Q	T	L	R	S	L	I	R	L	W	.	.	.	A	Y	E	A	W	R	I	F	A	D	R	L	V	.	G
Template Known Secondary structure		S		T	T	T		T	T																					T	S	S												.	.	.									T	T	T			.	S
Template Predicted Secondary structure																																												.	.	.														.
Template SS confidence
		2607	.	.	2610	.	.	.	.	.	.	.	.	.	2620	.	.	.	.	.	.	.	.	.	2630	.	.	.	.	.	.	.	.	.	2640	.	.	.	.	.	.	.	.				.	2650	.	.	.	.	.	.	.	.	.	2660	.		.
		698	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	S	F	D	R	V	M	P	L	L	N	V	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	E	K	N	S	F	E	Q	L	L	Y	E	T	V
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		2663	.	.	.	.	.	.	2670	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D