Job Description A2A690 Confidence 96.33% Date Tue Jul 30 13:13:22 BST 2013 Rank 131 Aligned Residues 243 % Identity 15% Template c3vkhA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic; PDBTitle: x-ray structure of a functional full-length dynein motor domain Resolution 3.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	L	I	L	C	G	P	P	G	S	G	K	T	M	T	L	T	S	T	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	S	S									G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2668	.	2670	.	.	.	.	.	.	.	.	.	2680	.	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	P	D	F	E	V	V	S	L	N	F	S	S	A	T	T	P	E	L	L	L	K	T	F	D	H	H	C	E	Y	K	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G		T	T										S	S											T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													2690	.	.	.	.	.	.	.	.	.	2700	.	.	.	.	.	.	.	.	.	2710	.	.	.	.	.	.	.	.	.	2720	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.	.	.	.	.	.	540	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	.	.	D	E	D	F	I	I	L	I
Query Conservation																																																				.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	S	G	E	T	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	T	Q	L	G	K	W	L	V	V	F	C
Template Known Secondary structure			T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2723	.	.	.	.	.	.	2730																																								.	.	.	.	.	.	.	.	.	2740	.	.	.
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.													.	.	.	.	.	.	.	580	.	.	.						.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query Sequence		D	G	L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N	F	P	S	W	.	.	.	.	.	.	.	.	.	.	.	.	L	K	L	I	V	T	V	R	T	S	L	.	.	.	.	.	Q
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Alig confidence										.																							.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation										.
Template Sequence		D	E	I	N	L	P	S	T	.	D	K	Y	G	T	Q	R	V	I	T	F	I	R	Q	M	V	E	K	G	G	F	W	R	T	S	D	H	T	W	I	K	L	D	K	I	Q	F	V	G	A	C	N	P	P	T	D	A	G	R	V	Q
Template Known Secondary structure		S	S	T	T					.		T	T	S													T	T						T	T	T	T						S	S										T	T	S	T	T
Template Predicted Secondary structure										.
Template SS confidence
		2744	.	.	.	.	.	2750	.		.	.	.	.	.	.	.	.	2760	.	.	.	.	.	.	.	.	.	2770	.	.	.	.	.	.	.	.	.	2780	.	.	.	.	.	.	.	.	.	2790	.	.	.	.	.	.	.	.	.	2800	.	.
		585	.	.	.	.	590	.		.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		E	I	T	K	L	L	P	.	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K	M	D	N	T	T	F	G	K	L	S
Query Conservation									.
Alig confidence									.												.
Template Conservation																					.
Template Sequence		L	T	H	R	F	L	R	H	A	P	I	L	L	V	D	F	P	S	T	.	S	S	L	T	Q	I	Y	G	T	F	N	R	A	L	M	K	L	L	P	N	L	R	S	F	A	D	N	L	T	D	A	M	V	E	F	Y	S	E	S	Q
Template Known Secondary structure								T	T			B									.															T	T	S		G	G	G	T	T	S
Template Predicted Secondary structure																					.
Template SS confidence
		2803	.	.	.	.	.	.	2810	.	.	.	.	.	.	.	.	.	2820	.		.	.	.	.	.	.	.	.	2830	.	.	.	.	.	.	.	.	.	2840	.	.	.	.	.	.	.	.	.	2850	.	.	.	.	.	.	.	.	.	2860	.
		644	.	.	.	.	.	650	.	.	.	.	.	.					.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		S	H	L	K	T	L	S	Q	G	S	Y	L	Y	.	.	.	.	L	K	L	T	F	D	L	I	E	K	G	Y	L	V	L	K	S	S	S	Y	K	V	V	P	V	S	L	S	E	V	Y	L	L	Q	C	N	M	K	F	P	T	Q	S
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.
Template Conservation
Template Sequence		K	R	F	T	P	D	I	Q	A	H	Y	I	Y	S	P	R	E	L	S	R	W	D	R	A	L	L	E	A	I	Q	T	M	D	G	C	T	L	E	G	L	V	R	L	W	A	H	E	A	L	R	L	F	Q	D	R	L	V	E	T	E
Template Known Secondary structure				S		T	T	T		T	T																				T	T	S	S	S																			T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		2862	.	.	.	.	.	.	.	2870	.	.	.	.	.	.	.	.	.	2880	.	.	.	.	.	.	.	.	.	2890	.	.	.	.	.	.	.	.	.	2900	.	.	.	.	.	.	.	.	.	2910	.	.	.	.	.	.	.	.	.	2920	.
		700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	D	R	V	M	P	L	L	N	V	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	E	W	T	D	K	K	I	D	E	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		2922	.	.	.	.	.	.	.	2930	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D