Job Description A2A690 Confidence 93.36% Date Tue Jul 30 13:13:22 BST 2013 Rank 246 Aligned Residues 241 % Identity 15% Template c3vkgA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic; PDBTitle: x-ray structure of an mtbd truncation mutant of dynein motor domain Resolution 2.81 Å

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		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	L	I	L	C	G	P	P	G	S	G	K	T	M	T	L	T	S	T	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S	T	T	S	S									G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2668	.	2670	.	.	.	.	.	.	.	.	.	2680	.	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																		.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																		.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	P	D	F	E	V	V	S	L	N	F	.	.	.	.	S	S	A	T	T	P	E	L	L	L	K	T	F	D	H	H	C	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G		T	T									.	.	.	.		T	T															.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																		.	.	.	.
Template SS confidence
																									2690	.	.	.	.	.	.	.	.	.	2700	.					.	.	.	.	.	.	.	.	2710	.	.	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	Y	K	R	T	P	S	G	E	T	V	L	R	P	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	K	W	L	V	V	F	C	D	E
Template Known Secondary structure		.	.	.	.	.	.	.						T	T	S							S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									2719	2720	.	.	.	.	.	.	.	.	.	2730	.	.	.	.																											.	.	.	.	.	2740	.	.	.	.	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.													.	.	.	.	.	.	.	580	.	.	.						.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query Sequence		L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N	F	P	S	W	.	.	.	.	.	.	.	.	.	.	.	.	L	K	L	I	V	T	V	R	T	S	L	.	.	.	.	.	Q	E	I
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Alig confidence																	.														.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation																	.
Template Sequence		I	N	L	P	S	T	D	K	Y	G	T	Q	R	V	I	.	T	F	I	R	Q	M	V	E	K	G	G	F	W	R	T	S	D	H	T	W	I	K	L	D	K	I	Q	F	V	G	A	C	N	P	P	T	D	A	G	R	V	Q	L	T
Template Known Secondary structure		T	T						T	T	S						.										S					T	T	T	T						S	S										T	T	S	T	T
Template Predicted Secondary structure																	.
Template SS confidence
		2746	.	.	.	2750	.	.	.	.	.	.	.	.	.	2760		.	.	.	.	.	.	.	.	.	2770	.	.	.	.	.	.	.	.	.	2780	.	.	.	.	.	.	.	.	.	2790	.	.	.	.	.	.	.	.	.	2800	.	.	.	.
		587	.	.	590	.		.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		T	K	L	L	P	.	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K	M	D	N	T	T	F	G	K	L	S	S	H
Query Conservation							.
Alig confidence							.														.
Template Conservation																					.
Template Sequence		H	R	F	L	R	H	A	P	I	L	L	V	D	F	P	S	T	S	S	.	L	T	Q	I	Y	G	T	F	N	R	A	L	M	K	L	L	P	N	L	R	S	F	A	D	N	L	T	D	A	M	V	E	F	Y	S	E	S	Q	K	R
Template Known Secondary structure						T	T														.													T	T	S		G	G	G	T	T	S
Template Predicted Secondary structure																					.
Template SS confidence
		2805	.	.	.	.	2810	.	.	.	.	.	.	.	.	.	2820	.	.	.		.	.	.	.	.	.	2830	.	.	.	.	.	.	.	.	.	2840	.	.	.	.	.	.	.	.	.	2850	.	.	.	.	.	.	.	.	.	2860	.	.	.
		646	.	.	.	650	.	.	.	.	.									.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.
Query Sequence		L	K	T	L	S	Q	G	S	Y	L	.	.	.	.	.	.	.	.	Y	L	K	L	T	F	D	L	I	E	K	G	Y	L	V	L	K	S	S	S	Y	K	V	V	P	V	S	L	S	E	V	Y	L	L	Q	C	N	M	K	F	P	T
Query Conservation												.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.																									.	.	.						.
Template Conservation																																												.	.	.						.
Template Sequence		F	T	P	D	I	Q	A	H	Y	I	Y	S	P	R	E	L	S	R	W	D	R	A	L	L	E	A	I	Q	T	M	D	G	C	T	L	E	G	L	V	R	L	W	.	.	.	A	H	E	A	L	.	R	L	F	Q	D	R	L	V	E
Template Known Secondary structure		S		T	T	T	S	T	T																					T	S	S				T	T							.	.	.						.				T	T	T		S	S
Template Predicted Secondary structure																																												.	.	.						.
Template SS confidence
		2864	.	.	.	.	.	2870	.	.	.	.	.	.	.	.	.	2880	.	.	.	.	.	.	.	.	.	2890	.	.	.	.	.	.	.	.	.	2900	.	.	.	.	.				.	.	.	.	2910		.	.	.	.	.	.	.	.	.
		698	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	S	F	D	R	V	M	P	L	L	N	V	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	E	K	E	W	T	D	K	K	I	D	E	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		2920	.	.	.	.	.	.	.	.	.	2930	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D