Job Description A2A690 Confidence 99.93% Date Tue Jul 30 13:13:22 BST 2013 Rank 33 Aligned Residues 176 % Identity 23% Template c3ui2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic; PDBTitle: crystal structure of the cpsrp54 tail bound to cpsrp43 Resolution 3.18 Å

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		1034	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	T	A	L	T	A	A	A	G	R	G	K	L	D	V	C	R	L	L	L	E	Q	G	A	A	V	A	Q	P	N	R	R	G	A	V	P	L	F	S	T	V	R	Q	G	H	W	Q	I	V	D	L	L	L	T	H	G	A	D	V
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		Y	E	T	P	W	W	T	A	A	R	K	A	D	E	Q	A	L	S	Q	L	L	E	D	.	R	D	V	D	A	V	D	E	N	G	R	T	A	L	L	F	V	A	G	L	G	S	D	K	C	V	R	L	L	A	E	A	G	A	D	L
Template Known Secondary structure											T	T	T								T	T	T	T	.			T	T		B		T	T	S		B									T											T	T			T
Template Predicted Secondary structure																									.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		1094	.	.		.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		N	M	A	.	D	K	Q	G	R	T	P	L	M	M	A	A	S	E	G	H	L	G	T	V	D	F	L	L	A	Q	G	A	S	I	A	L	M	D	K	E	G	L	T	A	L	S	W	A	C	L	K	G	H	L	S	V	V	R	S	L
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		D	H	R	D	M	R	G	G	L	T	A	L	H	M	A	A	G	Y	V	R	P	E	V	V	E	A	L	V	E	L	G	A	D	I	E	V	E	D	E	R	G	L	T	A	L	E	L	A	R	E	I	L	K	T	T	P	K	G	N	P
Template Known Secondary structure		T				S	S	S											T	T											T	T			T	T				T	T													T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		1153	.	.	.	.	.	.	1160	.	.										.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.				.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		V	D	N	G	A	A	T	D	H	A	.	.	.	.	.	.	.	.	.	D	K	N	G	R	T	P	L	D	L	A	A	F	Y	G	D	A	E	V	V	Q	F	L	.	.	.	V	D	H	G	A	M	I	E	H	V	D	Y	S	G	M
Query Conservation												.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		M	Q	F	G	R	R	I	G	L	E	K	V	I	N	V	L	E	G	Q	V	F	E	Y	A	E	V	D	E	I	V	E	K	R	G	K	G	K	D	V	E	Y	L	V	R	W	K	D	G	G	D	C	E	W	V	K	G	V	H	V	A
Template Known Secondary structure																																			S		T	T	S								S	S	S	S							S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		1201	.	.	.	.	.	.	.	.	1210
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	L	D	R	A	V	G	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	V	A	K	D	Y	E	D	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D