Job Description A2A690 Confidence 99.97% Date Tue Jul 30 13:13:22 BST 2013 Rank 17 Aligned Residues 225 % Identity 24% Template c3jxiA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain Resolution 2.30 Å Model Dimensions (Å) X:48.164 Y:65.107 Z:36.346

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		947	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.		.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.				1000	.	.
Predicted Secondary structure																																							.																	.	.	.
Query SS confidence																																							.																	.	.	.
Query Sequence		L	D	K	N	G	Q	C	A	L	V	H	A	A	L	R	G	H	L	E	V	V	K	F	L	I	Q	C	D	W	T	M	A	G	Q	Q	Q	G	.	V	F	K	K	S	H	A	I	Q	Q	A	L	I	A	A	A	.	.	.	S	M	G
Query Conservation																																							.																	.	.	.
Alig confidence																																							.																	.	.	.
Template Conservation
Template Sequence		M	K	V	F	N	R	P	I	L	F	D	I	V	S	R	G	S	P	D	G	L	E	G	L	L	S	F	L	L	T	H	K	K	R	L	T	D	E	E	F	R	E	P	S	T	G	K	T	C	L	P	K	A	L	L	N	L	S	A	G
Template Known Secondary structure																	T		G	G	G	G	T	T									T			T	T	S	G	G	G	S		T	T	T										T	S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		1003	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.		1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		Y	T	E	I	V	S	Y	L	L	D	L	P	E	K	D	E	E	E	V	E	R	A	Q	I	N	S	F	.	D	S	L	W	G	E	T	A	L	T	A	A	A	G	R	G	K	L	D	V	C	R	L	L	L	E	Q	G	A	A	V	A
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		R	N	D	T	I	P	I	L	L	D	I	A	E	K	T	G	N	M	R	E	F	I	N	S	P	F	R	D	V	Y	Y	R	G	Q	T	A	L	H	I	A	I	E	R	R	C	K	H	Y	V	E	L	L	V	E	K	G	A	D	V	H
Template Known Secondary structure		B		T												T	T							T			B			S	S			S	B									T	T											T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		1062															.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090				.	.	.	.	.	.	.	.	.	1100	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	R	R	G	A	V	P	L	F	S	T	V	R	Q	G	H	W	Q	I	V	D	L	L	L	T	H	G	.	.	.	A	D	V	N	M	A	D	K	Q	G	R	T	P	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		A	Q	A	R	G	R	F	F	Q	P	K	D	E	G	G	Y	F	Y	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	P	H	I	V	H	Y	L	T	E	N	G	H	K	Q	A	D	L	R	R	Q	D	S	R	G	N	T	V	L
Template Known Secondary structure										S	S	S					S			S		S	S								T	T												S	S					T	T				T	T	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		1105	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	A	A	S	E	G	H	L	G	T	V	D	F	L	L	A	Q	G	A	S	I	A	L	M	D	K	E	G	L	T	A	L	S	W	A	C	L	K	G	H	L	S	V	V	R	S	L	V	D	N	G	A	A	T	D	H	A	D	K
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	L	V	A	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	R	E	N	T	K	F	V	T	K	M	Y	D	L	L	L	I	K	C	A	K	L	F	P	D	T	N	L	E	A	L	L	N	N
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																							T	T			G	G	G				T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.																		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		1165	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	R	T	P	L	D	L	A	A	F	Y	G	D	A	E	V	V	Q	F	L	V	D	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	L	S	P	L	M	M	A	A	K	T	G	K	I	G	I	F	Q	H	I	I	R	R
Template Known Secondary structure		T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D