Job Description A2A690 Confidence 98.61% Date Tue Jul 30 13:13:22 BST 2013 Rank 82 Aligned Residues 352 % Identity 14% Template c3iz8F_ PDB info PDB header:apoptosis Chain: F: PDB Molecule:apaf-1 related killer dark; PDBTitle: structure of the drosophila apoptosome Resolution 6.90 Å

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		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	T	T	E	S	V	F	V	G	R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R	M
Query Conservation
Alig confidence																																.	.																					.	.	.	.	.	.	.	.
Template Conservation																																.	.																					.	.	.	.	.	.	.	.
Template Sequence		N	Q	V	F	A	K	Y	N	V	S	R	L	Q	P	Y	L	K	L	R	Q	A	L	L	E	L	R	P	A	K	N	.	.	V	L	I	D	G	V	L	G	S	G	K	T	W	V	A	L	D	V	C	L	.	.	.	.	.	.	.	.
Template Known Secondary structure		T		S				S																				S	S			.	.						S	T	T	S	S											.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.																					.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	K	V	Q	C	K	M	D	F	K	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S		.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
																																																		167	.	.	170	.	.	.	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	F	W	L	N	L	K	N	C	N	S	P	E	T	V	L	E	M	L	Q	K	L	L	Y	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	N	W	T	S	R	S	D	H	S	S	N	I	K	L	R	I	H
Template Known Secondary structure										S	S	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	T	T	T	S				S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G	L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N	F	P	S	W	L
Query Conservation
Alig confidence															.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation															.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Sequence		S	I	Q	A	E	L	R	R	L	L	K	S	K	.	.	.	.	.	.	P	Y	E	N	C	L	L	V	L	L	N	V	Q	N	A	.	.	.	.	.	.	.	.	.	.	.	.	K	A	W	N	A	F	N	L	S	C	.	.	.	.
Template Known Secondary structure														S	.	.	.	.	.	.	T	T	S	S							S					.	.	.	.	.	.	.	.	.	.	.	.								S	S		.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.							.	.	.	.	240	.	.	.	.	.	.	.	.	.	250													.	.	.	.	.	.	.	.	.	260
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	I	V	T	V	R	T	S	L	Q	E	I	T	K	L	L	P	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	L	L	T	T	R	F	K	Q	V	T	D	F	L	S	A	A	T	T	T	H	I	S	L	D	H	H	S	M	T	L	T	P	D	E	V	K	S	L	L	L	K	Y	L	D	C	R	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S		S										S	S							S	S	S	S																			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670															.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	N	T	T	F	G	K	L	S	S	H	L	K	T	L	S	Q	G	S	Y	L	Y	L	K	L	T	F	D	L	I	E	K	G	Y	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	S	S	S	Y	K	V	V
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	P	Q	D	L	P	R	E	V	L	T	T	N	P	R	R	L	S	I	I	A	E	S	I	R	D	G	L	A	T	W	D	N	W	K	H	V	N	C	D	K	L	T	T	I	I	E	S	S	L	N	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T	T																							S		S	S								S															S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
			680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	V	S	L	S	E	V	Y	L	L	Q	C	N	M	K	F	P	T	Q	S	S	F	D	R	V	M	P	L	L	N	V	A	V	A	S	L	H	P	L	T	D	E	H	I	F	Q	A	I	N	A	G	S	I	E	G	T	L	E	W
Query Conservation		.
Alig confidence		.													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	A	E	Y	R	K	M	F	D	R	L	S	.	.	V	F	P	P	S	A	H	I	P	T	I	L	L	S	L	I	W	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	I	K
Template Known Secondary structure			T	T									T	T	.	.	S	S		T	T	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S
Template Predicted Secondary structure															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.																								.	.	.	.
		739	740	.	.	.	.	.	.	.	.	.	750			.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		E	D	F	Q	Q	R	M	E	N	L	S	M	.	.	F	L	I	K	R	R	D	M	T	R	M	F	V	H	P	S	F	R	E	W	L	I	W	R	E	E	G	E	K	T	K	F	L	C	D	P	R	S	G	H	T	L	L	A	F	W
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		S	D	V	M	V	V	V	N	K	L	H	K	Y	S	L	V	E	K	Q	P	K	E	S	T	I	S	I	P	S	I	Y	L	E	L	K	V	K	L	E	N	E	Y	A	L	H	R	S	I	V	D	H	Y	N	I	P	K	T	F	D	S
Template Known Secondary structure													T	S	S	S	S	S	B		S	S	S	S			B													S			T	T
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		797	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	R	Q	E	G	K	L	N	R	Q	Q	T	I	E	L	G	H	H	I	L	K	A	H	I	F	K	G	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	L	I	P	P	Y	L	D	Q	Y	F	Y	S	H	I	G	H	H	L	K	N	I	E	H	P	E	R	M	T
Template Known Secondary structure		S	S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.