Job Description A2A690 Confidence 94.90% Date Tue Jul 30 13:13:22 BST 2013 Rank 181 Aligned Residues 141 % Identity 15% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.						.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.																								.
Query SS confidence																								.	.	.	.	.																								.
Query Sequence		R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	N	A	S	V	N	Q	G	.	.	.	.	.	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	.	H	G	T	R	M	R	Q	I	A
Query Conservation																								.	.	.	.	.																								.
Alig confidence																								.	.	.	.	.																								.
Template Conservation
Template Sequence		I	K	I	V	Y	E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C
Template Known Secondary structure													T	T	S	S								S	S	S									T	T	S	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	T	W	R	P	G	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F
Template Known Secondary structure					S	S	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.																																					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R
Query Conservation
Alig confidence							.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation							.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		G	N	P	Q	E	.	.	.	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	.
Template Known Secondary structure				T	T		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		S										S	S						.
Template Predicted Secondary structure							.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
		160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.																.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G
Query Conservation
Alig confidence		.	.														.	.
Template Conservation		.	.														.	.
Template Sequence		.	.	I	E	E	M	K	Q	I	S	N	V	I	H	P	.	.	H	E	V	I	L	V	I	D	G
Template Known Secondary structure		.	.														.	.	S								G
Template Predicted Secondary structure		.	.														.	.
Template SS confidence
				201	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D