Job Description A2A690 Confidence 93.46% Date Tue Jul 30 13:13:22 BST 2013 Rank 242 Aligned Residues 127 % Identity 20% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		L	Q	S	S	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	.	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E
Query Conservation																																					.
Alig confidence										.	.	.																									.																		.	.	.	.	.	.	.
Template Conservation										.	.	.																																											.	.	.	.	.	.	.
Template Sequence		L	N	P	K	K	Q	N	V	.	.	.	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	.	.	.	.	.	.	.
Template Known Secondary structure				S	S	S				.	.	.							S	S	S	S	T	T																							S				T	T	G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																																											.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	.	.	P	V	D	I	V	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	S							S	S							S	S	S			S	.	.	S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
																															145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.														.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.														.
Template Sequence		E	G	M	E	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	.	.	.	L	E	E	M	K	Q	I	K	E	I	T	N	P	.
Template Known Secondary structure						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S									S		S	S					.	.	.							T	T	S	S	S			.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.														.
Template SS confidence
		174	.	.	.	.	.																		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.
		534	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	D	F	I	I	L	I	D	G	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	D	E	I	I	L	V	I	D	G	T
Template Known Secondary structure		.	S								G	G
Template Predicted Secondary structure		.
Template SS confidence
			213	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D