Job Description A2A690 Confidence 99.40% Date Tue Jul 30 13:13:22 BST 2013 Rank 73 Aligned Residues 336 % Identity 14% Template c2qenA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:walker-type atpase; PDBTitle: the walker-type atpase paby2304 of pyrococcus abyssi Resolution 2.25 Å

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		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	F	E	V	P	S	I	T	T	E	S	V	F	V	G	R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S
Query Conservation
Alig confidence																																			.	.	.	.	.																					.	.
Template Conservation																																			.	.	.	.	.																					.	.
Template Sequence		M	L	F	D	L	R	P	K	T	R	R	E	D	I	F	D	R	E	E	E	S	R	K	L	E	E	S	L	E	N	Y	P	L	.	.	.	.	.	T	L	L	L	G	I	R	R	V	G	K	S	S	L	L	R	A	F	L	N	.	.
Template Known Secondary structure				S			S				S	G	G	G	S		S																S		.	.	.	.	.							T	T	S	S											.	.
Template Predicted Secondary structure																																			.	.	.	.	.																					.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	H	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C
Query Conservation
Alig confidence		.	.	.			.
Template Conservation		.	.	.			.
Template Sequence		.	.	.	E	R	.	P	G	I	L	I	D	C	R	E	L	Y	A	E	R	G	H	I	T	R	E	E	L	I	K	E	L	Q	S	T	I	S	P	F	Q	K	F	Q	S	K	F	K	I	S	L	N	L	K	F	L	T	L	E	P	R
Template Known Secondary structure		.	.	.		S	.	S												T	T	T		B													S		S									T						G	G	G	T	S		G	G
Template Predicted Secondary structure		.	.	.			.
Template SS confidence
					54	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G	L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.
Template Sequence		K	L	S	L	R	E	V	F	R	E	L	N	D	L	G	E	E	L	.	.	.	.	.	.	.	.	.	G	E	F	I	V	A	F	D	E	A	Q	Y	L	R	F	Y	G	S	R	G	G	K	E	L	L	A	L	F	A	Y	A	Y	D
Template Known Secondary structure		G																		.	.	.	.	.	.	.	.	.	S								T	G	G	G	G	G	G	B	T	T	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.										.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		568	.	570	.	.	.	.	.	.	.	.	.	580											.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.
Query Sequence		N	F	P	S	W	L	K	L	I	V	T	V	R	.	.	.	.	.	.	.	.	.	.	T	S	L	Q	E	I	T	K	L	L	P	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R
Query Conservation															.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		S	L	P	N	L	K	I	I	L	T	G	S	E	V	G	L	L	H	D	F	L	K	I	T	D	Y	E	S	P	L	Y	G	R	I	A	G	E	V	L	V	K	P	F	D	K	D	.	.	.	.	.	T	S	V	E	F	L	K	R	G
Template Known Secondary structure				T	T								S	S										T	T		T	T	S	T	T	T	T															.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.	.	.	.
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.		.	.	.	670	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K	M	D	N	T	T	F	G	K	L	S	S	H	L	K	T	L	S	Q	G	S	Y	L	Y	L	K	L	T	F	D	L	I	E	K	.	G	Y	L	V	L	K	S	S	S	Y
Query Conservation																																																			.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	N	L	D	V	P	E	N	E	I	E	E	A	V	E	L	L	D	G	I	P	G	W	L	V	V	F	G	V	E	Y	L	R	N	G	D	F	G	R	A	M	K	R	T
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T																T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.														.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	P	V	S	L	S	E	V	Y	L	L	Q	C	N	M	K	F	P	T	Q	S	S	F	D	R	V	M	P	L	L	N	V	A	V	A	S	L	H	P	L	T	D	E	H	I	F	Q	A	I	N	A	G	S	I	E	G	T	L
Query Conservation
Alig confidence																					.	.	.	.	.	.											.	.																				.	.
Template Conservation																					.	.	.	.	.	.											.	.																				.	.
Template Sequence		L	E	V	A	K	G	L	I	M	G	E	L	E	E	L	R	R	R	S	.	.	.	.	.	.	P	R	Y	V	D	I	L	R	A	I	.	.	A	L	G	Y	N	R	W	S	L	I	R	D	Y	L	A	V	K	G	T	.	.	K	I
Template Known Secondary structure																					.	.	.	.	.	.											.	.		T	T			S											T	T		.	.
Template Predicted Secondary structure																					.	.	.	.	.	.											.	.																				.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.							.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.
		737	.	.	740	.	.	.	.	.	.	.	.	.	750	.		.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		E	W	E	D	F	Q	Q	R	M	E	N	L	S	M	F	.	L	I	K	R	R	D	M	T	R	M	F	V	H	P	S	F	R	E	W	L
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		P	E	P	R	L	Y	A	L	L	E	N	L	K	K	M	N	W	I	V	E	E	D	N	T	Y	K	I	A	D	P	V	V	A	T	V	L
Template Known Secondary structure																T	T	S					T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.