Job Description A2A690 Confidence 98.73% Date Tue Jul 30 13:13:22 BST 2013 Rank 80 Aligned Residues 324 % Identity 14% Template c2qbyB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:cell division control protein 6 homolog 3; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

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		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		F	V	G	R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	.	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R	M	R	Q	I	A	S	D
Query Conservation																				.
Alig confidence																				.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	F	R	E	D	I	L	R	D	A	A	I	A	I	R	Y	F	V	K	N	E	V	K	F	S	N	L	F	L	G	L	T	G	T	G	K	T	F	V	S	K	Y	I	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T																	T	T												T	T	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	E	E	V	K	K	E	D	E	E	Y	K	D	V	K	Q	A	Y	V	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																									78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R	G	V
Query Conservation
Alig confidence								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	R	E	V	G	G	.	T	P	Q	A	V	L	S	S	L	A	G	K	L	T	G	F	S	V	P	K	H	G	I	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	Y
Template Known Secondary structure							S	.																S				S	S	S	S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.																										130	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G	L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N	F	P	S	W	L	K	L	I	V	T	V
Query Conservation
Alig confidence											.	.	.	.	.																						.	.	.	.	.
Template Conservation											.	.	.	.	.																						.	.	.	.	.
Template Sequence		I	D	K	I	K	N	G	T	R	.	.	.	.	.	N	I	R	A	I	I	Y	L	D	E	V	D	T	L	V	K	R	R	G	G	D	.	.	.	.	.	I	V	L	Y	Q	L	L	R	S	D	A	N	I	S	V	I	M	I	S	N
Template Known Secondary structure										S	.	.	.	.	.	S	S								T	T						S	T	T	S		.	.	.	.	.								T	S	S	S									S
Template Predicted Secondary structure											.	.	.	.	.																						.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		580	.	.	.					.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		R	T	S	L	.	.	.	.	Q	E	I	T	K	L	L	P	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K	M	D
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																					.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		D	I	N	V	R	D	Y	M	E	P	R	V	L	S	S	L	G	P	S	V	I	F	K	P	Y	D	A	E	.	.	.	.	.	Q	L	K	F	I	L	S	K	Y	A	E	.	.	.	.	.	.	.	Y	G	L	I	K	G	T	Y	D
Template Known Secondary structure		S	T	T	T	T	T	T	S							T														.	.	.	.	.												.	.	.	.	.	.	.		T	S		T	T	S
Template Predicted Secondary structure																														.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.	230
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.				.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		N	T	T	F	G	K	L	S	S	H	L	K	T	L	S	Q	G	S	Y	L	Y	L	K	L	T	F	D	L	I	E	K	.	.	.	G	Y	L	V	L	K	S	S	S	Y	K	V	V	P	V	S	L	S	E	V	Y	L	L	Q	C	N
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.
Template Conservation
Template Sequence		D	E	I	L	S	Y	I	A	A	I	S	A	K	E	H	G	D	A	R	K	A	V	N	L	L	F	R	A	A	Q	L	A	S	G	G	G	I	I	R	K	E	H	V	D	K	A	I	V	D	Y	E	Q	E	R	L	I	E	A	V	K
Template Known Secondary structure		S												T	T																		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.			750
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		M	K	F	P	T	Q	S	S	F	D	R	V	M	P	L	L	N	V	A	V	A	S	L	H	P	L	T	D	E	H	I	F	Q	A	I	N	A	G	S	I	E	G	T	L	E	W	E	D	F	Q	Q	R	M	E	N	L	S	.	.	M
Query Conservation																																																											.	.
Alig confidence					.	.	.	.	.	.																																																	.	.
Template Conservation					.	.	.	.	.	.
Template Sequence		A	L	P	.	.	.	.	.	.	F	H	Y	K	L	A	L	R	S	L	I	E	S	E	D	V	M	S	A	H	K	M	Y	T	D	L	C	N	K	F	K	Q	K	P	L	S	Y	R	R	F	S	D	I	I	S	E	L	D	M	F	G
Template Known Secondary structure		S	S		.	.	.	.	.	.												T			B															T	T																			T	T
Template Predicted Secondary structure					.	.	.	.	.	.
Template SS confidence
		291	.	.							.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		751	.	.	.	.	.	.	.									.	760	.	.	.	.	.	.			.	.	.	770	.
Predicted Secondary structure										.	.	.	.	.	.	.	.									.	.
Query SS confidence										.	.	.	.	.	.	.	.									.	.
Query Sequence		F	L	I	K	R	R	D	M	.	.	.	.	.	.	.	.	T	R	M	F	V	H	P	S	.	.	F	R	E	W	L
Query Conservation										.	.	.	.	.	.	.	.									.	.
Alig confidence										.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		I	V	K	I	R	I	I	N	R	G	R	A	G	G	V	K	K	Y	A	L	V	E	D	K	E	K	V	L	R	A	L
Template Known Secondary structure		S									T	T	T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.