34 c2nyjA_ Probab=99.93   E-value=1.9e-25  Score=181.92  Aligned_columns=225  Identities=22%

Q ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCHHHH---HHHCCCHH
Q ss_conf             78799999998599999999998688745444465456-6657689999---99869799
Q batch____       950 NGQCALVHAALRGHLEVVKFLIQCDWTMAGQQQGVFKK-SHAIQQALIA---AASMGYTE 1005 (1994)
Q Consensus       950 ~g~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~-~~~~~t~L~~---A~~~g~~~ 1005 (1994)
                      .++|||+.|+..|+.++|+.||+.+........+.+.. +..|.|+|+.   ++..|+.+
T Consensus         3 ~~rt~L~~Av~~g~~~~v~~LL~~~~~~~~~~~~~~~~~~~~G~t~L~~a~~~~~~~~~~   62 (244)
T c2nyjA_           3 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAXLNLHNGQND   62 (244)
T ss_dssp             CCHHHHHHHHHHTCSTTTTTHHHHHHHHCCCTTSGGGSCTTTCCCHHHHHHHCCBTTBCH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCHH
T ss_conf             761089999981999999999997652145567833218888788889999986321888


Q ss_pred             HHHHHHHCCCCCCCHHCCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             999997323320000000010122-23567429999998689789999997689866788
Q batch____      1006 IVSYLLDLPEKDEEEVERAQINSF-DSLWGETALTAAAGRGKLDVCRLLLEQGAAVAQPN 1064 (1994)
Q Consensus      1006 iv~~Ll~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 1064 (1994)
                      ++..++..++.............. ....+.++++.+...++.+++..++..+...+...
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (244)
T c2nyjA_          63 TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAA  122 (244)
T ss_dssp             HHHHHHHHHHTTTCSHHHHTCBCCSSSSCSCBHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHHHHCCHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCC
T ss_conf             887632110001220000000000020048845566786317640002333100012333


Q ss_pred             CC--------CCCHHHHHHHCCHHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHHCCH
Q ss_conf             88--------8559999998392999999985489---8332556788599999983899
Q batch____      1065 RR--------GAVPLFSTVRQGHWQIVDLLLTHGA---DVNMADKQGRTPLMMAASEGHL 1113 (1994)
Q Consensus      1065 ~~--------g~tpL~~A~~~g~~~~~~~Ll~~ga---~~~~~~~~g~t~l~~a~~~g~~ 1113 (1994)
                      ..        +.++++.+...++......++..+.   ..+..+..+.++++.+      
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  176 (244)
T c2nyjA_         123 NGDFFKKTKFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL------  176 (244)
T ss_dssp             CSGGGSSCCCCCSHHHHHHHTTCHHHHHHHHTCSSCCCCTTCCCTTCCCHHHHH------
T ss_pred             CCCCCCHHHCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHH------
T ss_conf             333320221044113333210122111000000010112343212245833445------


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf             999999962788777686667899999983849999999976998566688888899999
Q batch____      1114 GTVDFLLAQGASIALMDKEGLTALSWACLKGHLSVVRSLVDNGAATDHADKNGRTPLDLA 1173 (1994)
Q Consensus      1114 ~~~~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpL~~A 1173 (1994)
                                 .....+..|.|++++|+..|+..++++|+++|+++|.+|.+|+||||+|
T Consensus       177 -----------~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~a~~n~~d~~G~TpL~lA  225 (244)
T c2nyjA_         177 -----------VEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALA  225 (244)
T ss_dssp             -----------HTTCCCCHHHHHHHHHHHHHHHHHHHHTCTTCCGGGCCCSSCCCHHHHH
T ss_pred             -----------HHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf             -----------5303444352024566405969999998617886767889757789999


Q ss_pred             HHCCCHHHEEEECCCCCC
Q ss_conf             986996772311015887
Q batch____      1174 AFYGDAEVVQFLVDHGAM 1191 (1994)
Q Consensus      1174 a~~g~~~~v~~Ll~~ga~ 1191 (1994)
                      |.+||.+||++||++.+.
T Consensus       226 a~~G~~~ivk~LL~~e~~  243 (244)
T c2nyjA_         226 ASSGKIGVLAYILQREIH  243 (244)
T ss_dssp             HHHTCHHHHHHHHHHTTT
T ss_pred             HHHCCHHHHHHHHHCCCC
T ss_conf             981969999999836366


