Job Description A2A690 Confidence 99.93% Date Tue Jul 30 13:13:22 BST 2013 Rank 34 Aligned Residues 225 % Identity 22% Template c2nyjA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1 Resolution 3.20 Å

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		950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.		.	.	990	.	.	.	.	.	.	.				.	.	1000	.	.	.	.	.
Predicted Secondary structure																																								.											.	.	.
Query SS confidence																																								.											.	.	.
Query Sequence		N	G	Q	C	A	L	V	H	A	A	L	R	G	H	L	E	V	V	K	F	L	I	Q	C	D	W	T	M	A	G	Q	Q	Q	G	V	F	K	K	.	S	H	A	I	Q	Q	A	L	I	A	.	.	.	A	A	S	M	G	Y	T	E
Query Conservation																																								.											.	.	.
Alig confidence																																								.											.	.	.
Template Conservation
Template Sequence		Y	D	R	R	S	I	F	D	A	V	A	Q	S	N	C	Q	E	L	E	S	L	L	P	F	L	Q	R	S	K	K	R	L	T	D	S	E	F	K	D	P	E	T	G	K	T	C	L	L	K	A	X	L	N	L	H	N	G	Q	N	D
Template Known Secondary structure														T		S	T	T	T	T	T												T	T	S	G	G	G	S		T	T	T													B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		1006	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.		1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		I	V	S	Y	L	L	D	L	P	E	K	D	E	E	E	V	E	R	A	Q	I	N	S	F	.	D	S	L	W	G	E	T	A	L	T	A	A	A	G	R	G	K	L	D	V	C	R	L	L	L	E	Q	G	A	A	V	A	Q	P	N
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		T	I	A	L	L	L	D	V	A	R	K	T	D	S	L	K	Q	F	V	N	A	S	Y	T	D	S	Y	Y	K	G	Q	T	A	L	H	I	A	I	E	R	R	N	X	T	L	V	T	L	L	V	E	N	G	A	D	V	Q	A	A	A
Template Known Secondary structure												T	T	T		S					T		B			S	S	S	S		S		B								T	T										T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		1065	.									.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.				.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.																										.	.	.
Query SS confidence				.	.	.	.	.	.	.	.																										.	.	.
Query Sequence		R	R	.	.	.	.	.	.	.	.	G	A	V	P	L	F	S	T	V	R	Q	G	H	W	Q	I	V	D	L	L	L	T	H	G	A	.	.	.	D	V	N	M	A	D	K	Q	G	R	T	P	L	M	M	A	A	S	E	G	H	L
Query Conservation				.	.	.	.	.	.	.	.																										.	.	.
Alig confidence				.	.	.	.	.	.	.	.																										.	.	.																	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		N	G	D	F	F	K	K	T	K	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	L	A	I	V	K	F	L	L	Q	N	S	W	Q	P	A	D	I	S	A	R	D	S	V	G	N	T	V	L	H	A	L	.	.	.	.	.	.
Template Known Secondary structure			S	G	G	G	S	S						S								T	T										T		S	S					T	T				T	T									.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		1114	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	V	D	F	L	L	A	Q	G	A	S	I	A	L	M	D	K	E	G	L	T	A	L	S	W	A	C	L	K	G	H	L	S	V	V	R	S	L	V	D	N	G	A	A	T	D	H	A	D	K	N	G	R	T	P	L	D	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	V	E	V	A	D	N	T	V	D	N	T	K	F	V	T	S	X	Y	N	E	I	L	I	L	G	A	K	L	H	P	T	L	K	L	E	E	I	T	N	R	K	G	L	T	P	L	A	L	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		T	T																									T		T	T			G	G	G				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		1174	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	Y	G	D	A	E	V	V	Q	F	L	V	D	H	G	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	S	G	K	I	G	V	L	A	Y	I	L	Q	R	E	I	H
Template Known Secondary structure					T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D