Job Description A2A690 Confidence 95.19% Date Tue Jul 30 13:13:22 BST 2013 Rank 167 Aligned Residues 128 % Identity 14% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		L	Q	S	S	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	.	C	H	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E
Query Conservation																																			.
Alig confidence										.	.	.																							.																				.	.	.	.	.	.	.
Template Conservation										.	.	.																																											.	.	.	.	.	.	.
Template Sequence		W	T	P	T	K	G	N	V	.	.	.	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	.	.	.	.	.	.	.
Template Known Secondary structure						S	S			.	.	.						S	T	T	S	S															T	T											S	S	S				.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																																											.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	.	.	.	P	V	I	I	A	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T										S		.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template SS confidence
																															146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.														.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.														.
Template Sequence		E	G	V	E	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	.	.	.	F	E	E	M	L	Q	V	A	N	A	I	Q	P	.
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T													T	T					.	.	.														.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.														.
Template SS confidence
		174	.	.	.	.	.																180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.
		534	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	D	F	I	I	L	I	D	G	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	D	N	I	V	Y	V	M	D	A	S
Template Known Secondary structure		.	S								T	T
Template Predicted Secondary structure		.
Template SS confidence
			215	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D