Job Description A2A690 Confidence 100.00% Date Tue Jul 30 13:13:22 BST 2013 Rank 12 Aligned Residues 262 % Identity 22% Template c2fo1E_ PDB info PDB header:gene regulation/signalling protein/dna Chain: E: PDB Molecule:lin-12 protein; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna Resolution 3.12 Å Model Dimensions (Å) X:58.947 Y:68.210 Z:75.458

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		878	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.		.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		Y	R	T	E	V	L	N	N	A	P	I	L	C	V	Q	S	.	H	L	G	Y	T	E	M	V	A	L	L	L	E	F	G	A	N	V	D	A	S	S	E	S	G	L	T	P	L	G	Y	A	A	A	A	G	F	L	S	I	V	V	L
Query Conservation																		.
Alig confidence																		.																				.
Template Conservation																																						.
Template Sequence		W	X	P	P	X	E	N	E	E	S	P	I	K	L	H	T	E	A	A	G	S	Y	A	I	T	E	P	I	T	R	E	S	V	N	I	I	.	D	P	R	H	N	R	T	V	L	H	W	I	A	S	N	S	S	A	E	K	S	E	D
Template Known Secondary structure																					S	S	S				S			S	T	T	T	T	T	T		.			S	S											T	T			S			T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		945	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980		.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.
		937	.									.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.
Query Sequence		L	C	.	.	.	.	.	.	.	.	K	K	R	A	K	V	D	H	L	D	K	N	G	Q	C	A	L	V	H	A	A	L	R	G	H	L	E	V	V	K	F	L	I	Q	C	D	W	T	M	A	G	Q	Q	Q	G	V	F	K	K	S
Query Conservation				.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		L	I	V	H	E	A	K	E	C	I	A	A	G	A	D	V	N	A	X	D	C	D	E	N	T	P	L	X	L	A	V	L	A	R	R	R	R	L	V	A	Y	L	X	K	A	G	.	.	.	.	.	.	.	A	D	P	T	I	Y	N
Template Known Secondary structure													T				T	T				T	T	S											T											T	T	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		1072	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.								.	.	1120	.	.	.	.
		989	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	I	Q	Q	A	L	I	A	A	A	S	M	G	Y	T	E	I	V	S	Y	L	L	D	L	P	E	K	D	E	E	E	V	E	R	A	Q	I	N	S	F	D	S	L	W	G	E	T	A	L	T	A	A	A	G	R	G	K	L	D
Query Conservation
Alig confidence																												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		K	S	E	R	S	A	L	H	Q	A	A	A	N	R	D	F	G	X	X	V	Y	X	L	N	S	T	.	.	.	.	.	.	.	K	L	K	G	D	I	E	E	L	D	R	N	G	X	T	A	L	X	I	V	A	H	N	E	G	R	D
Template Known Secondary structure		T	T											T	T									T	T	S		.	.	.	.	.	.	.					T	T	S				T	T	S										S		S	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		1125	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150								.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.
		1049	1050	.	.	.	.												.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.		1090	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		V	C	R	L	L	L	.	.	.	.	.	.	.	.	.	.	.	E	Q	G	A	A	V	A	Q	P	N	R	R	G	A	V	P	L	F	S	T	V	R	Q	G	H	W	Q	I	V	D	L	L	L	T	H	.	G	A	D	V	N	M	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		Q	V	A	S	A	K	L	L	V	E	K	G	A	K	V	D	Y	D	G	A	A	R	K	D	S	E	K	Y	K	G	R	T	A	L	H	Y	A	A	Q	V	S	N	X	P	I	V	K	Y	L	V	G	E	K	G	S	N	K	D	K	Q
Template Known Secondary structure													T			S	S			S	G	G	G	T	S	S	S	S						T						S	S													S				T	T
Template Predicted Secondary structure
Template SS confidence
		1178	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.
		1097	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	Q	G	R	T	P	L	M	M	A	A	S	E	G	H	L	G	T	V	D	F	L	L	A	Q	G	A	S	I	A	L	M	D	K	E	G	L	T	A	L	S	W	A	C	L	K	G	H	L	S	V	V	R	S	L	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	D	G	K	T	P	I	X	L	A	A	Q	E	G	R	I	E	V	V	X	Y	L	I	Q	Q	G	A	S	V	E	A	V	D	A	T	D	H	T	A	R	Q	L	A	Q	A	N	N	H	H	N	I	V	D	I	F	D	R
Template Known Secondary structure			T	T												T											T	T			S	S				S	S	S										T	T										T
Template Predicted Secondary structure
Template SS confidence
		1238	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D