Job Description A2A690 Confidence 99.17% Date Tue Jul 30 13:13:22 BST 2013 Rank 75 Aligned Residues 335 % Identity 13% Template c2fnaA_ PDB info PDB header:atp-binding protein Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of an archaeal aaa+ atpase (sso1545) from sulfolobus2 solfataricus p2 at 2.00 a resolution Resolution 2.00 Å

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		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	E	V	P	S	I	T	T	E	S	V	F	V	G	R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C
Query Conservation
Alig confidence																														.	.	.	.	.	.	.																							.	.	.
Template Conservation																														.	.	.	.	.	.	.																							.	.	.
Template Sequence		L	F	D	T	S	P	K	D	N	R	K	D	F	F	D	R	E	K	E	I	E	K	L	K	G	L	R	A	.	.	.	.	.	.	.	P	I	T	L	V	L	G	L	R	R	T	G	K	S	S	I	I	K	I	G	I	N	.	.	.
Template Known Secondary structure		T	T		S	S				S	G	G	G	S													T		S	.	.	.	.	.	.	.	S							S	T	T	S	S											.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.																							.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																												52	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	P	Y	I	Y	L	D	L	R	K	F	E	E	R	N	Y	I	S	Y	K	D	F	L	L	E	L	Q	K	E	I	N	K	L	V	K	R	L	P	S	L	L	K	A	L	K	N	I	Q	G	I	V	I	X	G	N	E	I	K	F
Template Known Secondary structure		T								G	G	G	G	T	T		S																							T	T					T	T	T	S	T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G	L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		N	R	L	S	F	A	N	L	L	E	S	F	E	Q	A	S	.	.	.	.	.	.	.	.	.	K	D	N	V	I	I	V	L	D	E	A	Q	E	L	.	.	.	V	K	L	R	G	V	N	L	L	P	A	L	A	Y	A	Y	D	N
Template Known Secondary structure																T		.	.	.	.	.	.	.	.	.	S	S								T	G	G	G	G	.	.	.	G	G		T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590												.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	P	S	W	L	K	L	I	V	T	V	R	T	S	L	Q	E	I	T	K	L	L	.	.	.	.	.	.	.	.	.	.	.	P	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		L	K	R	.	I	K	F	I	X	S	G	S	E	X	G	L	L	Y	D	Y	L	R	V	E	D	P	E	S	P	L	F	G	R	A	F	S	T	V	E	L	K	P	F	S	R	E	E	A	I	E	F	L	R	R	G	F	Q	E	A	D
Template Known Secondary structure			T	T	.								S	S								T	T	T	T		T	T	S	T	T	T	T																												T
Template Predicted Secondary structure					.
Template SS confidence
		167	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.			.	.	.	670	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K	M	D	N	T	T	F	G	K	L	S	S	H	L	K	T	L	S	Q	G	S	Y	L	Y	L	K	L	T	F	D	L	I	E	K	.	.	G	Y	L	V	L	K	S	S	S
Query Conservation																																																			.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	E	V	V	Y	E	K	I	G	G	I	P	G	W	L	T	Y	F	G	F	I	Y	L	D	N	K	N	L	D	F	A	I	N	Q	T
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.																					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	V	V	P	V	S	L	S	E	V	Y	L	L	Q	C	N	M	K	F	P	T	Q	S	S	F	D	R	V	M	P	L	L	N	V	A	V	A	S	L	H	P	L	T	D	E	H	I	F	Q	A	I	N	A	G	S	I	E	G	T
Query Conservation
Alig confidence																						.	.	.																																			.	.	.
Template Conservation																						.	.	.																																			.	.	.
Template Sequence		L	E	Y	A	K	K	L	I	L	K	E	F	E	N	F	L	H	G	R	E	.	.	.	I	A	R	K	R	Y	L	N	I	X	R	T	L	S	K	C	G	K	W	S	D	V	K	R	A	L	E	L	E	E	G	I	E	I	.	.	.
Template Known Secondary structure																		T	T		G	.	.	.	G	G												T	T		B															S			.	.	.
Template Predicted Secondary structure																						.	.	.																																			.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		736	.	.	.	740	.	.	.	.	.	.	.	.	.	750		.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		L	E	W	E	D	F	Q	Q	R	M	E	N	L	S	M	.	F	L	I	K	R	R	D	M	T	R	M	F	V	H	P	S	F	R	E	W	L
Query Conservation																	.
Alig confidence		.															.
Template Conservation		.
Template Sequence		.	S	D	S	E	I	Y	N	Y	L	T	Q	L	T	K	H	S	W	I	I	K	E	G	E	K	Y	C	P	S	E	P	L	I	S	L	A	F
Template Known Secondary structure		.															T	T	S				S	S	S					S	S							T
Template Predicted Secondary structure		.
Template SS confidence
			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.