Job Description A2A690 Confidence 99.96% Date Tue Jul 30 13:13:22 BST 2013 Rank 21 Aligned Residues 217 % Identity 24% Template c2f8xK_ PDB info PDB header:transcription/dna Chain: K: PDB Molecule:neurogenic locus notch homolog protein 1; PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence Resolution 3.25 Å

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		920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	L	G	Y	A	A	A	A	G	F	L	S	I	V	V	L	L	C	K	K	R	A	K	V	D	H	L	D	K	N	G	Q	C	A	L	V	H	A	A	L	R	G	H	L	E	V	V	K	F	L	I	Q	C	D	W	T	M	A	G
Query Conservation
Alig confidence																												.	.	.	.	.																									.	.	.	.	.
Template Conservation																												.	.	.	.	.																									.	.	.	.	.
Template Sequence		T	P	L	M	I	A	S	C	S	A	V	I	S	D	F	I	Y	S	L	H	N	Q	T	D	R	T	.	.	.	.	.	G	E	T	A	L	H	L	A	A	R	Y	S	R	S	D	A	A	K	R	L	L	E	A	S	.	.	.	.	.
Template Known Secondary structure																					S				S	S	S	.	.	.	.	.											T	T											T	T	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		1884	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.						1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.
		980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	Q	G	V	F	K	K	S	H	A	I	Q	Q	A	L	I	A	A	A	S	M	G	Y	T	E	I	V	S	Y	L	L	D	L	P	E	K	D	E	E	E	V	E	R	A	Q	I	N	S	F	D	S	L	W	G	E	T	A	L	T
Query Conservation
Alig confidence		.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	A	D	A	N	I	Q	D	N	M	G	R	T	P	L	H	A	A	V	S	A	D	A	Q	G	V	F	Q	I	L	I	R	N	R	.	.	.	.	.	.	.	.	.	A	T	D	L	D	A	R	M	H	D	G	T	T	P	L	I
Template Known Secondary structure		.	.			T	T				T	T	S										T	T											S	S	.	.	.	.	.	.	.	.	.	S			T	T				T	T
Template Predicted Secondary structure		.	.																																		.	.	.	.	.	.	.	.	.
Template SS confidence
				1953	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.										.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.
		1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	G	R	G	K	L	D	V	C	R	L	L	L	E	Q	G	A	A	V	A	Q	P	N	R	R	G	A	V	P	L	F	S	T	V	R	Q	G	H	W	Q	I	V	D	L	L	L	T	H	G	A	D	V	N	M	A	D	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	A	R	L	A	V	E	G	M	L	E	D	L	I	N	S	H	A	D	V	N	A	V	D	D	L	G	K	S	A	L	H	W	A	A	A	V	N	N	V	D	A	A	V	V	L	L	K	N	G	A	N	K	D	M	Q	N	N	R
Template Known Secondary structure						T	T		T	T								T	T			S	S				T	T											T	T											T	T			T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		2002	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.
		1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	T	P	L	M	M	A	A	S	E	G	H	L	G	T	V	D	F	L	L	A	Q	G	A	S	I	A	L	M	D	K	E	G	L	T	A	L	S	W	A	C	L	K	G	H	L	S	V	V	R	S	L	V	D	N	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	T	P	L	F	L	A	A	R	E	G	S	Y	E	T	A	K	V	L	L	D	H	F	A	N	R	D	I	T	D	H	M	D	R	L	P	R	D	I	A	Q	E	R	M	H	H	D	I	V	R	L	L	D	E	Y	N	L
Template Known Secondary structure													T											T	T			T	T				T	T	S										T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		2062	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D