Job Description A2A690 Confidence 98.77% Date Tue Jul 30 13:13:22 BST 2013 Rank 79 Aligned Residues 338 % Identity 9% Template c1w5sB_ PDB info PDB header:replication Chain: B: PDB Molecule:origin recognition complex subunit 2 orc2; PDBTitle: structure of the aeropyrum pernix orc2 protein (adp form) Resolution 2.4 Å

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		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.							.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence		S	V	F	V	G	R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	.	.	.	.	.	.	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R
Query Conservation																						.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.
Template Sequence		P	E	L	R	V	R	R	G	E	A	E	A	L	A	R	I	Y	L	N	R	L	L	S	G	A	G	L	S	D	V	N	M	I	Y	G	S	I	G	R	V	G	I	G	K	T	T	L	A	K	F	T	V	K	.	.	.	.	.	.	.
Template Known Secondary structure		S	S		S	S	S	S																	T													T	T			S	S	S											.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	S	E	A	A	A	K	E	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																				75	.	.	.	.	80	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	V	K	Q	A	Y	V	N	A	F	N	A	P	N	L	Y	T	I	L	S	L	I	V	R	Q	T	G	Y	P	I	Q	V	R	G	A	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											G	G	G			S													T						T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G	L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N	F	P	S	W
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	L	D	I	L	K	A	L	V	D	N	L	Y	V	E	N	H	Y	L	L	V	I	L	D	E	F	Q	S	M	L	S	S	P	R	I	A	A	E	D	L	Y	T	L	L	R	V	H	E	E	I	P	S	R	D	G	V	N
Template Known Secondary structure		.	.	.	.															T									S	T					S		T	T	S										T					S			T	T	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.										.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		L	K	L	I	V	T	V	R	T	S	L	Q	E	I	T	K	L	L	P	F	.	.	.	.	.	.	.	.	.	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S	S	E
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.												.	.	.	.	.											.	.	.	.	.
Template Conservation																																										.	.	.	.	.											.	.	.	.	.
Template Sequence		R	I	G	F	L	L	V	A	S	D	V	R	A	L	S	Y	M	R	E	K	I	P	Q	V	E	S	Q	I	G	F	K	L	H	L	P	A	Y	K	S	R	.	.	.	.	.	E	L	Y	T	I	L	E	Q	R	A	.	.	.	.	.
Template Known Secondary structure												T															T	T		S												.	.	.	.	.											.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.											.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.		.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		I	Q	N	N	I	S	L	N	G	K	M	D	N	T	T	F	G	K	L	S	S	H	L	K	T	L	S	Q	G	S	Y	L	Y	L	K	L	T	F	D	L	I	E	K	.	G	Y	L	V	L	K	S	S	S	Y	K	V	V	P	V	S
Query Conservation																																													.
Alig confidence		.	.	.																																									.
Template Conservation		.	.	.
Template Sequence		.	.	.	E	L	G	L	R	D	T	V	W	E	P	R	H	L	E	L	I	S	D	V	Y	G	E	D	K	G	G	D	G	S	A	R	R	A	I	V	A	L	K	M	A	C	E	M	A	E	A	M	G	R	D	S	L	S	E	D	L
Template Known Secondary structure		.	.	.				B		G	G	G															G	G	G	T	S																			G	G	G	T		S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		683	.	.	.	.	.	.	690	.	.	.	.	.								.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.					.	.	.	.	.	.	730	.
Predicted Secondary structure															.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence															.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		L	S	E	V	Y	L	L	Q	C	N	M	K	F	.	.	.	.	.	.	.	P	T	Q	S	S	F	D	R	V	M	P	L	L	N	V	A	V	A	S	L	H	P	L	T	D	E	H	I	.	.	.	.	F	Q	A	I	N	A	G	S
Query Conservation															.	.	.	.	.	.	.																													.	.	.	.
Alig confidence															.	.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		V	R	K	A	V	S	E	N	E	A	A	S	I	Q	T	H	E	L	E	A	L	S	I	H	E	L	I	I	L	R	L	I	A	E	A	T	L	G	G	M	E	W	I	N	A	G	L	L	R	Q	R	Y	E	D	A	S	L	T	M	Y
Template Known Secondary structure																						S																T	T	T		S	S															T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		732	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.			750	.	.	.	.	.	.	.		.	.	760	.	.	.	.	.	.	.	.	.	770	.	.
Predicted Secondary structure																				.	.									.
Query SS confidence																				.	.									.
Query Sequence		I	E	G	T	L	E	W	E	D	F	Q	Q	R	M	E	N	L	S	.	.	M	F	L	I	K	R	R	D	.	M	T	R	M	F	V	H	P	S	F	R	E	W	L	I
Query Conservation																				.	.									.
Alig confidence																				.	.									.
Template Conservation
Template Sequence		N	V	K	P	R	G	Y	T	Q	Y	H	I	Y	L	K	H	L	T	S	L	G	L	V	D	A	K	P	S	T	T	L	F	R	L	A	P	H	L	P	A	D	R	L	I
Template Known Secondary structure			S																		T	T	S														T	T	S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.