Job Description A2A690 Confidence 96.80% Date Tue Jul 30 13:13:22 BST 2013 Rank 116 Aligned Residues 246 % Identity 15% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna) Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	L	K	P	L	L	F	E	V	P	S	I	T	T	E	S	V	F	V	G	R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.																													.	.
Template Conservation							.	.	.	.	.	.	.	.																													.	.
Template Sequence		D	K	Y	R	P	.	.	.	.	.	.	.	.	K	S	L	N	A	L	S	H	N	E	E	L	T	N	F	L	K	S	L	S	D	Q	P	R	D	L	P	H	.	.	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A
Template Known Secondary structure		T	T	T			.	.	.	.	.	.	.	.		S	G	G	G			S										T	T	T	T		T	T					.	.						S	T	T	S	S							T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																													.	.
Template SS confidence
		6	.	.	.	10									.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	L	S	C	H	G	T	R	M	R	Q	I	A	S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		56	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L
Query Conservation
Alig confidence		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	S	I	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	H	L	E	I	T	P	S	N	D	R	I	V	I	Q	E	L	L	K	E	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.			S		T	T									S	S																					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G	L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	E	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	.	.	.	T	K	D	A	Q	A	A	L	R	R	T	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T											T	T	S	S	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
																														118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.		.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		S	K	M	I	G	N	F	P	S	W	L	K	L	I	V	T	V	R	T	S	L	Q	E	I	T	K	L	L	P	.	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S
Query Conservation																															.
Alig confidence								.	.	.	.																				.																.	.											.	.	.
Template Conservation								.	.	.	.																																				.	.											.	.	.
Template Sequence		E	K	Y	S	K	N	.	.	.	.	I	R	L	I	M	V	C	D	S	M	S	P	I	I	A	P	I	K	S	Q	C	L	L	I	R	C	P	A	P	S	D	S	E	I	S	.	.	T	I	L	S	D	V	V	T	N	E	.	.	.
Template Known Secondary structure				S	T	T	T	.	.	.	.								S		S		S	S						T	T	S															.	.											.	.	.
Template Predicted Secondary structure								.	.	.	.																																				.	.											.	.	.
Template SS confidence
		159	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	I	Q	N	N	I	S	L	N	G	K	M	D	N	T	T	F	G	K	L	S	S	H	L	K	T	L	S	Q	G	S	Y	L	Y	L	K	L	T	F	D	L	I	E	K	G	Y	L	V	L	K	S	S	S	Y	K	V	V	P	V
Query Conservation
Alig confidence		.	.	.	.	.							.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.							.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	R	I	Q	L	E	T	.	.	.	.	.	.	.	K	D	I	L	K	R	I	A	Q	A	S	N	G	N	L	R	V	S	L	L	M	L	E	S	M	A	L	N	N	E	L	A	L	K	S	S	S	P	I	I	K	P
Template Known Secondary structure		.	.	.	.	.	T						.	.	.	.	.	.	.	S											T	T										T					T	T	T	T				S	S
Template Predicted Secondary structure		.	.	.	.	.							.	.	.	.	.	.	.
Template SS confidence
							210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	S	E	V	Y	L	L	Q	C	N	M	K	F	P	T	Q	S	S	F	D	R	V	M	P	L	L	N	V	A
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		D	W	I	I	V	I	H	K	L	T	R	K	I	V	.	K	E	R	S	V	N	S	L	I	E	C	R	A	V	L
Template Known Secondary structure																.				S
Template Predicted Secondary structure																.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D