Job Description A2A690 Confidence 93.04% Date Tue Jul 30 13:13:22 BST 2013 Rank 258 Aligned Residues 159 % Identity 14% Template c1q57G_ PDB info PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 Resolution 3.45 Å

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		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	V	G	R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R	M	R	Q	I	A	S	D
Query Conservation
Alig confidence												.											.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation												.											.	.	.	.	.																												.	.	.	.	.	.	.
Template Sequence		L	F	S	G	C	T	G	I	N	D	.	K	T	L	G	A	R	G	G	E	V	.	.	.	.	.	I	M	V	T	S	G	S	G	M	V	M	S	T	F	V	R	Q	Q	A	L	Q	W	G	T	A	M	G	.	.	.	.	.	.	.
Template Known Secondary structure				S	S		T	T				.							T	T			.	.	.	.	.						S	S		S														T	T	T	S		.	.	.	.	.	.	.
Template Predicted Secondary structure												.											.	.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y	C	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	V	G	L	A	M	L	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																					335	.	.	.	.	340	.	.	.
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	.	S	V	E	E	T	A	E	D	L	I	G	L	H	N	R	V	R	L	R	Q	S	D	S	L	K	R	E	I	I	E	N	G	K	F	D	Q	W	F	D	E	L	F	G	N	D	T	F	H	L	Y	D	S	F
Template Known Secondary structure		S	.	.	.	.	.	.														T	T	S			T	T											T	S											T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
		344							.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
			511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.						.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure		.																																						.	.	.	.	.
Query SS confidence		.																																						.	.	.	.	.
Query Sequence		.	P	M	A	S	F	R	R	G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G	L	N	E	A	.	.	.	.	.	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K
Query Conservation		.																																						.	.	.	.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.
Template Sequence		E	T	D	R	L	L	A	K	L	A	Y	M	R	S	G	L	G	C	D	.	.	.	.	.	.	.	.	.	V	I	I	L	D	H	I	S	I	V	V	S	A	S	G	E	S	D	E	R	K	M	I	D	N	L	M	T	K	L	K	G
Template Known Secondary structure																T	T			S	.	.	.	.	.	.	.	.	.							T	T				S			S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.										420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		565	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	G	N	F	P	S	W	L	K	L	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	K	S	T	G	V	V	L	V	V	I	C
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D