Job Description A2A690 Confidence 99.92% Date Tue Jul 30 13:13:22 BST 2013 Rank 37 Aligned Residues 213 % Identity 25% Template c1oy3D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex Resolution 2.05 Å

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		911	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.				.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		V	D	A	S	S	E	S	G	L	T	P	L	G	Y	A	A	A	A	G	F	L	S	I	V	V	L	L	C	K	K	R	A	K	.	.	.	V	D	H	L	D	K	N	G	Q	C	A	L	V	H	A	A	L	R	G	H	L	E	V	V
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.
Template Conservation
Template Sequence		F	G	Y	V	T	E	D	G	D	T	A	L	H	L	A	V	I	H	Q	H	E	P	F	L	D	F	L	L	G	F	S	A	G	H	E	Y	L	D	L	Q	N	D	L	G	Q	T	A	L	H	L	A	A	I	L	G	E	A	S	T	V
Template Known Secondary structure							T	T											T	T													T	T	S	G	G	G	G				T	T	S											T
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		968	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	L	I	Q	C	D	W	T	M	A	G	Q	Q	Q	G	V	F	K	K	S	H	A	I	Q	Q	A	L	I	A	A	A	S	M	G	Y	T	E	I	V	S	Y	L	L	D	L	P	E	K	D	E	E	E	V	E	R	A	Q	I	N
Query Conservation
Alig confidence									.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.
Template Sequence		E	K	L	Y	A	A	G	.	.	.	.	.	.	.	A	G	V	L	V	A	E	R	G	G	H	T	A	L	H	L	A	C	R	V	R	A	H	T	C	A	C	V	L	L	Q	P	R	P	S	H	P	R	D	A	D	E	D	W	R	L
Template Known Secondary structure							T	T	.	.	.	.	.	.	.			S	S				T	T	S								T	T	T	T									S	S	S			S	S								G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		1028	.			1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.		.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.
Predicted Secondary structure				.	.																													.
Query SS confidence				.	.																													.
Query Sequence		S	F	.	.	D	S	L	W	G	E	T	A	L	T	A	A	A	G	R	G	K	L	D	V	C	R	L	L	L	E	Q	G	.	A	A	V	A	Q	P	N	R	R	G	A	V	P	L	F	S	T	V	R	Q	G	H	W	Q	I	V	D
Query Conservation				.	.																													.
Alig confidence				.	.																													.
Template Conservation
Template Sequence		Q	L	E	A	E	N	Y	D	G	H	T	P	L	H	V	A	V	I	H	K	D	A	E	M	V	R	L	L	R	D	A	G	A	D	L	N	K	P	E	P	T	C	G	R	T	P	L	H	L	A	V	E	A	Q	A	A	S	V	L	E
Template Known Secondary structure		G	T	T				T	T	S										T	T												T			T	T				T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		1085	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	T	H	G	A	D	V	N	M	A	D	K	Q	G	R	T	P	L	M	M	A	A	S	E	G	H	L	G	T	V	D	F	L	L	A	Q	G	A	S	I	A	L	M	D	K	E	G
Query Conservation
Alig confidence																																											.	.	.
Template Conservation																																											.	.	.
Template Sequence		L	L	L	K	A	G	A	D	P	T	A	R	M	Y	G	G	R	T	P	L	G	S	A	L	L	R	P	N	P	I	L	A	R	L	L	R	A	H	G	A	P	.	.	.	E	P	E	D	G
Template Known Secondary structure						T	T			T	T				T	T	S									T	S	S											T	T			.	.	.
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D