Job Description A2A690 Confidence 96.81% Date Tue Jul 30 13:13:22 BST 2013 Rank 115 Aligned Residues 205 % Identity 16% Template c1jr3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	V	F	V	G	R	D	W	V	F	H	E	I	D	A	Q	L	Q	S	S	N	A	S	V	N	Q	G	V	V	I	V	G	N	I	G	F	G	K	T	A	I	I	S	R	L	V	A	L	S	C	H	G	T	R	M	R	Q	I	A
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		M	R	W	Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	.	.	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S
Template Known Secondary structure						T	T										T	T	T	T	T	S			.	.		S								T	T	S	S													T		S	S			S	S	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	S	P	H	A	S	P	K	H	V	D	A	N	R	E	L	P	L	T	Q	A	P	S	A	H	S	S	I	T	S	G	S	C	P	G	T	P	E	M	R	R	R	Q	E	E	A	M	R	R	L	A	S	Q	V	V	A	Y	H	Y
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	G	H	C	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T
Template Known Secondary structure			S		S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	S			S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.																																									.	.	.	.	.	70	.	.	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Q	A	D	N	A	Y	T	C	L	V	P	E	F	V	H	N	V	A	A	L	L	C	R	S	P	Q	L	T	A	Y	R	E	Q	L	L	R	E	P	H	L	Q	S	M	L	S	L	R	S	C	V	Q	D	P	M	A	S	F	R	R
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	P	E	K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	S	S	S	B													S	S			T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	L	E	P	L	E	N	L	H	K	E	R	K	I	P	D	E	D	F	I	I	L	I	D	G	L	N	E	A	E	F	H	K	P	D	Y	G	D	T	I	V	S	F	L	S	K	M	I	G	N	F	P	S	W	L	K	L	I	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.															.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.															.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	W	V	T	D	A	A	L	L	.	.	.	T	D	A	A	A	N	A	L	L	K	T	L	E	E	.	.	.	.	P	P	A	E	T	W	F	F	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S		G	G	G	B	.	.	.														S	.	.	.	.			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.															.	.	.	.
Template SS confidence
																						111	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.		.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		T	V	R	T	S	L	Q	E	I	T	K	L	L	P	.	F	H	R	I	F	L	D	R	L	E	E	N	E	A	I	D	Q	D	L	Q	A	Y	I	L	H	R	I	H	S	S	S	E	I	Q	N	N	I	S	L	N	G	K	M	D	N
Query Conservation																.
Alig confidence																.													.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P	P	P	E	Q	.	.	.	.	.	Y	A	V	T	W	L	S	R	E	V	T	M	S	Q	D	A	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S		S	T	T	S		T	T	T	T	T	T	S												.	.	.	.	.										S							.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	F	G	K	L	S	S	H	L	K	T	L	S	Q	G	S	Y	L	Y	L	K	L	T	F	D
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	L	A	A	L	R	L	S	A	G	S	P	G	A	A	L	A	L	F	Q
Template Known Secondary structure		.	.	.	.	.	.							T	T	T	T										S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D