 |
Job Description | A1L0T3 | Confidence | 5.39% | Date | Tue Jul 30 13:14:16 BST 2013 |
Rank | 51 | Aligned Residues | 45 |
% Identity | 9% | Template | c3iyjE_ |
PDB info |
PDB header:virus | Chain: E: PDB Molecule:major capsid protein l1; |
PDBTitle: bovine papillomavirus type 1 outer capsid
|
Resolution | 4.20 Å |
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
|
. | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
| . | . |
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | P | S | E | R | P | S | I | G | W | T | P | K | E | A | E | M | Q | I | G | P | Q | P | D | . |
. |
G | W | S | R | G | W | K | P | G | D | R | G | A | V | P | L | P | L | S | P | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |
|   |   |   |
|
|
|
|   |
|   |
|
|
|
|
|   |
|
|   |
|
|   |
|   |   |
|   |
|
|   |   |   |   |   |   |   |
|   |
|
|
Template Sequence |   |
T | T | D | D | R | K | Q | T | G | L | D | A | K | Q | Q | Q | I | L | L | L | G | C | T | P | A | E | G | E | Y | W | T | T | A | R | P | C | V | T | D | R | L | E | N | G | A | C | P |
Template Known Secondary structure |   |
| S |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | S | S |
|
|  |  |  |  |  |  |
|
|
|
|
| S | S |
|
|
|
| S | S |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
136 | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|