Emaill.a.kelley@imperial.ac.uk
DescriptionA0PK84
DateWed Jul 10 14:28:08 BST 2013
Unique Job ID8b671c3d7f6075cd

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c3ky9B_



84.8 7 PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
2c2vrwB_



81.3 7 PDB header:signaling protein
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor
3c3bjiA_



72.9 7 PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
4c1jocA_



68.4 13 PDB header:membrane protein
Chain: A: PDB Molecule:early endosomal autoantigen 1;
PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate
5c3zyqA_



61.3 15 PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution
6c3okyA_



58.8 23 PDB header:signaling protein
Chain: A: PDB Molecule:plexin-a2;
PDBTitle: plexin a2 in complex with semaphorin 6a
7c1dvpA_



58.1 18 PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
8c1x4uA_



53.6 10 PDB header:lipid binding protein
Chain: A: PDB Molecule:zinc finger, fyve domain containing 27 isoform b;
PDBTitle: solution structure of the fyve domain from human fyve2 domain containing 27 isoform b protein
9d2pg3a1



53.5 21 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
10c2yqmA_



53.5 17 PDB header:protein transport
Chain: A: PDB Molecule:run and fyve domain-containing protein 1;
PDBTitle: solution structure of the fyve domain in zinc finger fyve2 domain-containing protein 12
11c2k2cA_



50.8 16 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution nmr structure of n-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2a
12c3al9B_



50.4 23 PDB header:signaling protein
Chain: B: PDB Molecule:plexin-a2;
PDBTitle: mouse plexin a2 extracellular domain
13c3al8B_



49.0 23 PDB header:signaling protein
Chain: B: PDB Molecule:plexin-a2;
PDBTitle: plexin a2 / semaphorin 6a complex
14c2a20A_



47.6 13 PDB header:metal binding protein
Chain: A: PDB Molecule:regulating synaptic membrane exocytosis protein
PDBTitle: solution structure of rim2 zinc finger domain
15d2dkta2



45.0 17 Fold:Zinc hairpin stack
Superfamily:Zinc hairpin stack
Family:Zinc hairpin stack
16c1z2qA_



44.7 17 PDB header:membrane protein
Chain: A: PDB Molecule:lm5-1;
PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major
17d1olza3



44.5 25 Fold:Trefoil/Plexin domain-like
Superfamily:Plexin repeat
Family:Plexin repeat
18c3ol2B_



43.1 18 PDB header:signaling protein
Chain: B: PDB Molecule:plexin-b1;
PDBTitle: receptor-ligand structure of human semaphorin 4d with plexin b1.
19d1joca1



43.0 13 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
20c3nvnB_



42.9 19 PDB header:viral protein/signaling protein
Chain: B: PDB Molecule:plexin-c1;
PDBTitle: molecular mechanism of guidance cue recognition
21c3nvqE_



not modelled 42.8 15 PDB header:signaling protein/protein binding
Chain: E: PDB Molecule:semaphorin-7a;
PDBTitle: molecular mechanism of guidance cue recognition
22d1wfka_



not modelled 42.8 10 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
23c4gz8A_



not modelled 42.1 22 PDB header:signaling protein
Chain: A: PDB Molecule:semaphorin-3a;
PDBTitle: mouse semaphorin 3a, domains sema-psi-ig
24c2uzxB_



not modelled 41.6 12 PDB header:signaling protein/receptor
Chain: B: PDB Molecule:hepatocyte growth factor receptor;
PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: crystal form i
25c2cszA_



not modelled 40.6 15 PDB header:signaling protein
Chain: A: PDB Molecule:synaptotagmin-like protein 4;
PDBTitle: solution structure of the ring domain of the synaptotagmin-2 like protein 4
26c1olzB_



not modelled 40.3 18 PDB header:developmental protein
Chain: B: PDB Molecule:semaphorin 4d;
PDBTitle: the ligand-binding face of the semaphorins revealed by the2 high resolution crystal structure of sema4d
27c3okyB_



not modelled 40.3 19 PDB header:signaling protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: plexin a2 in complex with semaphorin 6a
28d2ayja1



not modelled 39.3 17 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L40e
29c2uzyB_



not modelled 38.7 12 PDB header:signaling protein/receptor
Chain: B: PDB Molecule:hepatocyte growth factor receptor;
PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: low resolution, crystal form ii
30c3oktA_



not modelled 38.4 23 PDB header:signaling protein
Chain: A: PDB Molecule:plexin-a2;
PDBTitle: mouse plexin a2, extracellular domains 1-4
31d2dmda2



not modelled 38.3 43 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
32c3t7lA_



not modelled 38.0 17 PDB header:transport protein
Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 16;
PDBTitle: crystal structure of the fyve domain of endofin (zfyve16) at 1.1a2 resolution
33c4fwwA_



not modelled 37.5 24 PDB header:transferase
Chain: A: PDB Molecule:macrophage-stimulating protein receptor;
PDBTitle: crystal structure of the sema-psi extracellular domains of human ron2 receptor tyrosine kinase
34c3l0aA_



not modelled 37.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:putative exonuclease;
PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution
35d1njqa_



not modelled 36.8 42 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Plant C2H2 finger (QALGGH zinc finger)
36d1dvpa2



not modelled 35.9 22 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
37c1shyB_



not modelled 34.0 13 PDB header:growth factor/growth factor receptor
Chain: B: PDB Molecule:hepatocyte growth factor receptor;
PDBTitle: the crystal structure of hgf beta-chain in complex with the sema2 domain of the met receptor.
38c2yw8A_



not modelled 32.8 17 PDB header:metal binding protein
Chain: A: PDB Molecule:run and fyve domain-containing protein 1;
PDBTitle: crystal structure of human run and fyve domain-containing2 protein
39d2adra2



not modelled 31.6 38 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
40c1y02A_



not modelled 30.9 9 PDB header:metal binding protein
Chain: A: PDB Molecule:fyve-ring finger protein sakura;
PDBTitle: crystal structure of a fyve-type domain from caspase2 regulator carp2
41d1paaa_



not modelled 30.2 38 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
42c2gb5B_



not modelled 30.1 8 PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
43d1wfla_



not modelled 28.8 14 Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
44d1vfya_



not modelled 28.1 19 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
45c3bl5E_



not modelled 26.0 17 PDB header:hydrolase
Chain: E: PDB Molecule:queuosine biosynthesis protein quec;
PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis
46c3izbP_



not modelled 25.1 56 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
47d1zbdb_



not modelled 24.9 10 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
48d2fiya1



not modelled 24.6 7 Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
49c3goxB_



not modelled 24.1 13 PDB header:hydrolase/dna
Chain: B: PDB Molecule:restriction endonuclease hpy99i;
PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta
50c2cr8A_



not modelled 23.1 22 PDB header:cell cycle
Chain: A: PDB Molecule:mdm4 protein;
PDBTitle: solution structure of the zf-ranbp domain of p53-binding2 protein mdm4
51c3iz6P_



not modelled 22.6 56 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
52c2ysmA_



not modelled 22.2 18 PDB header:transferase
Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia
PDBTitle: solution structure of the first and second phd domain from2 myeloid/lymphoid or mixed-lineage leukemia protein 33 homolog
53c2c6bA_



not modelled 21.5 17 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase e3 mdm2;
PDBTitle: solution structure of the c4 zinc-finger domain of hdm2
54d1wila_



not modelled 20.9 24 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:variant PHD-like domain
55c3swrA_



not modelled 20.4 17 PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: structure of human dnmt1 (601-1600) in complex with sinefungin
56c3iz5p_



not modelled 20.4 20 PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l15 (l15e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
57d1shyb2



not modelled 19.2 12 Fold:Trefoil/Plexin domain-like
Superfamily:Plexin repeat
Family:Plexin repeat
58c3j21g_



not modelled 18.1 17 PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l7ae;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
59d2it8a1



not modelled 17.6 47 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
60c2it8A_



not modelled 17.6 47 PDB header:plant protein
Chain: A: PDB Molecule:trypsin inhibitor 2;
PDBTitle: solution structure of a linear analog of the cyclic squash2 trypsin inhibitor mcoti-ii
61c2kfqA_



not modelled 17.5 31 PDB header:de novo protein
Chain: A: PDB Molecule:fp1;
PDBTitle: nmr structure of fp1
62c3cezA_



not modelled 17.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase;
PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei
63d1lpva_



not modelled 17.2 29 Fold:Cysteine-rich DNA binding domain, (DM domain)
Superfamily:Cysteine-rich DNA binding domain, (DM domain)
Family:Cysteine-rich DNA binding domain, (DM domain)
64c1lpvA_



not modelled 17.2 29 PDB header:transcription
Chain: A: PDB Molecule:doublesex protein;
PDBTitle: drosophila melanogaster doublesex (dsx), nmr, 18 structures
65c2zetD_



not modelled 17.0 23 PDB header:signaling protein
Chain: D: PDB Molecule:melanophilin;
PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin
66d2epra1



not modelled 16.8 15 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
67c3j3aL_



not modelled 16.6 67 PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s11;
PDBTitle: structure of the human 40s ribosomal proteins
68c3j20R_



not modelled 16.4 44 PDB header:ribosome
Chain: R: PDB Molecule:30s ribosomal protein s17p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
69c4a1dK_



not modelled 16.4 26 PDB header:ribosome
Chain: K: PDB Molecule:ubiquitin-60s ribosomal protein l40;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
70c2xzn5_



not modelled 16.4 29 PDB header:ribosome
Chain: 5: PDB Molecule:ribosomal protein s26e containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
71c1nj3A_



not modelled 16.0 22 PDB header:protein binding
Chain: A: PDB Molecule:npl4;
PDBTitle: structure and ubiquitin interactions of the conserved nzf2 domain of npl4
72c3zeyV_



not modelled 16.0 29 PDB header:ribosome
Chain: V: PDB Molecule:ribosomal protein s26, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
73c3j38a_



not modelled 15.8 21 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
74d2yt9a1



not modelled 15.7 38 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
75c3u5ga_



not modelled 15.6 27 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
76d1ha9a_



not modelled 15.2 47 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
77c3j39m_



not modelled 15.0 21 PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l14;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
78c2po8A_



not modelled 14.9 47 PDB header:plant protein
Chain: A: PDB Molecule:mcoti-ii;
PDBTitle: the structure of a two-disulfide intermediate of mcoti-ii
79c3zeyE_



not modelled 14.7 56 PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal proteins s11, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
80d1fcda3



not modelled 14.5 27 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
81c2eluA_



not modelled 14.5 43 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406
82d1zu1a2



not modelled 14.4 27 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
83d1llmc2



not modelled 13.6 28 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
84c3hcjB_



not modelled 13.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form)
85c3bvoA_



not modelled 13.0 21 PDB header:chaperone
Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor;
PDBTitle: crystal structure of human co-chaperone protein hscb
86c2xznQ_



not modelled 12.9 56 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein s17 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
87c2k8dA_



not modelled 12.7 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
88d2dlqa2



not modelled 12.4 30 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
89c3eh2B_



not modelled 12.4 17 PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24c;
PDBTitle: crystal structure of the human copii-coat protein sec24c
90c2k85A_



not modelled 12.1 4 PDB header:protein binding
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: p190-a rhogap ff1 domain
91d1wg2a_



not modelled 12.1 8 Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
92c3u5gL_



not modelled 11.8 56 PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s11-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
93d1u85a1



not modelled 11.8 28 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
94c2ljsA_



not modelled 11.6 47 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:trypsin inhibitor 3;
PDBTitle: solution structure of mcoti-v
95c1d4uA_



not modelled 11.4 9 PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
96d1xm0a1



not modelled 11.3 11 Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
97d1l1da_



not modelled 11.1 17 Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
98c2voyK_



not modelled 10.8 15 PDB header:hydrolase
Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
99c3pt6B_



not modelled 10.7 17 PDB header:transferase/dna
Chain: B: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of mouse dnmt1(650-1602) in complex with dna