Phyre 2 alignment of O88890 with c3o27B_

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Job Description | O88890
Confidence | 22.10% | Date | Wed Jul 10 14:08:25 BST 2013
Rank | 131 | Aligned Residues | 43
% Identity | 21% | Template | c3o27B_
PDB info | PDB header:dna binding protein | Chain: B: PDB Molecule:putative uncharacterized protein; | PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx
Resolution | 2.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | Y | H | G | K | I | S | R | E | T | G | E | K | L | L | L | A | T | G | L | D | G | S | Y | L | L | R | D | S | E | S | V | P | G | V | Y | C | L | C | V | L | Y | Q | G | Y | I | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | Y | L | L | I | P | K | D | I | A | E | A | . | L | . | D | I | K | P | D | D | T | F | I | L | N | M | E | . | Q | K | D | G | D | I | V | L | S | Y | K | R | V | K | E | L | K
Template Known Secondary structure |  |  | B |  |  |  |  |  |  |  |  |  |  | . | T | . | T |  |  | T | T |  |  |  |  |  |  |  |  | . |  |  | T | T |  |  |  |  |  |  |  |  |  | S | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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