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Job DescriptionP06240
Confidence100.00%DateWed Jul 10 14:01:50 BST 2013
Rank94Aligned Residues245
% Identity42%Templatec4hzsA_
PDB info PDB header:transferaseChain: A: PDB Molecule:activated cdc42 kinase 1; PDBTitle: crystal structure of ack1 kinase domain with c-terminal sh3 domain
Resolution3.23 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260........ .270.........280. ........290.
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Query Sequence  VPRETLKLVERLGAGQFGEVWMGYYNGHT. . . . KVAVKSLKQGSMS. . . . PDAFLAEANL
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Template Sequence  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA
Template Known Secondary structure 

GGG



B

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S
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   121........130.........140.........150.........160.........170.........180
 
   292.......300.........310.........320.........330.........340.........350.
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Query Sequence  MKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLNVNKLLDMAAQIAEG
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Template Sequence  MHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH. FLLGTLSRYAVQVAEG
Template Known Secondary structure  T


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   181........190.........200.........210.........220... ......230.........
 
   352.......360.........370.........380.........390.........400.........410.
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Query Sequence  MAFIEEQNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEA
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Template Sequence  MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPVPFA. . . . . . . . . . . WCAPES
Template Known Secondary structure  TT


S

SGGGSSSS


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   240.........250.........260.........270.........280.. ......
 
   412.......420.........430.........440.........450...... ...460.........470
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Query Sequence  INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG. YRMVRPDNCPEELY
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Template Sequence  LKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIY
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TTT

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   302.......310.........320.........330.........340.........350.........360.
 
   471........480.........490......
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Query Sequence  HLMMLCWKERPEDRPTFDYLRSVLDD
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Template Sequence  NVMVQCWAHKPEDRPTFVALRDFLLE
Template Known Secondary structure  T
SSGGGS

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   362.......370.........380.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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