Job Description P06240 Confidence 100.00% Date Wed Jul 10 14:01:50 BST 2013 Rank 267 Aligned Residues 234 % Identity 26% Template c4aguC_ PDB info PDB header:transferase Chain: C: PDB Molecule:cyclin-dependent kinase-like 1; PDBTitle: crystal structure of the human cdkl1 kinase domain Resolution 2.40 Å

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		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.																		.	.	.
Query SS confidence																									.																		.	.	.
Query Sequence		E	T	L	K	L	V	E	R	L	G	A	G	Q	F	G	E	V	W	M	G	Y	Y	N	.	G	H	T	K	V	A	V	K	S	L	K	Q	G	S	M	S	P	.	.	.	D	A	F	L	A	E	A	N	L	M	K	Q	L	Q	H	P
Query Conservation																									.																		.	.	.
Alig confidence																									.																		.	.	.
Template Conservation
Template Sequence		E	K	Y	E	K	I	G	K	I	G	E	G	S	Y	G	V	V	F	K	C	R	N	R	D	T	G	Q	I	V	A	I	K	K	F	L	E	S	E	D	D	P	V	I	K	K	I	A	L	R	E	I	R	M	L	K	Q	L	K	H	P
Template Known Secondary structure														S	S									T	T	T													S	S																					T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		299	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		R	L	V	R	L	Y	A	V	V	.	T	Q	E	P	I	Y	I	I	T	E	Y	M	E	N	G	S	L	V	D	F	L	K	T	P	S	G	I	K	L	N	V	N	K	L	L	D	M	A	A	Q	I	A	E	G	M	A	F	I	E	E
Query Conservation											.
Alig confidence											.																												.	.
Template Conservation																																							.	.
Template Sequence		N	L	V	N	L	L	E	V	F	R	R	K	R	R	L	H	L	V	F	E	Y	C	D	H	T	V	L	H	E	L	D	R	Y	Q	R	G	V	.	.	P	E	H	L	V	K	S	I	T	W	Q	T	L	Q	A	V	N	F	C	H	K
Template Known Secondary structure		T	B										T	T										S										T	S	S			.	.
Template Predicted Secondary structure																																							.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		Q	N	Y	I	H	R	D	L	R	A	A	N	I	L	V	S	D	T	L	S	C	K	I	A	D	F	G	L	A	R	L	I	E	D	N	E	Y	T	A	R	E	G	A	K	F	P	I	K	W	T	A	P	E	A	I	N	Y	G	T	.
Query Conservation																																																													.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	N	C	I	H	R	D	V	K	P	E	N	I	L	I	T	K	H	S	V	I	K	L	C	D	F	G	F	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	T	R	W	Y	R	S	P	E	L	L	V	G	D	T	Q
Template Known Secondary structure		T	T							S	G	G	G					T	T	S								T	T			.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G							T	T		S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.														150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	T	I	K	S	D	V	W	S	F	G	I	L	L	T	E	I	V	T	H	G	R	I	P	Y	P	G	M	T	N	P	E	V	I	Q	N	L	E	R	G	Y	R	M	V	R	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		Y	G	P	P	V	D	V	W	A	I	G	C	V	F	A	E	L	L	S	.	G	V	P	L	W	P	G	K	S	D	V	D	Q	L	Y	L	I	R	K	T	L	G	D	L	I	P	R	H	Q	Q	V	F	S	T	N	Q	Y	F	S	G
Template Known Secondary structure				T																	.	S	S		S				S	S														S											T		G	G	G	T	T
Template Predicted Secondary structure																					.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
																			464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	C	P	E	E	L	Y	H	L	M	M	L	C	W	K	E	R	P	E	D	R	P	T	F	D	Y	L	R	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	I	P	D	P	E	D	M	E	P	L	E	L	K	F	P	N	I	S	Y	P	A	L	G	L	L	K	G	C	L	H	M	D	P	T	E	R	L	T	C	E	Q	L	L	H
Template Known Secondary structure								S	S									T	T	S														S	S	T	T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D