Job Description P06240 Confidence 100.00% Date Wed Jul 10 14:01:50 BST 2013 Rank 234 Aligned Residues 250 % Identity 21% Template c1ua2A_ PDB info PDB header:cell cycle, transferase Chain: A: PDB Molecule:cell division protein kinase 7; PDBTitle: crystal structure of human cdk7 Resolution 3.02 Å

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		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		K	L	V	E	R	L	G	A	G	Q	F	G	E	V	W	M	G	Y	Y	N	.	G	H	T	K	V	A	V	K	S	L	K	Q	G	S	M	S	P	D	A	F	L	A	E	A	N	L	M	K	Q	L	Q	H	P	R	L	V	R	L	Y
Query Conservation																						.
Alig confidence																						.												.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		E	K	L	D	F	L	G	E	G	Q	F	A	T	V	Y	K	A	R	D	K	N	T	N	Q	I	V	A	I	K	K	I	N	.	.	.	.	.	.	R	T	A	L	R	E	I	K	L	L	Q	E	L	S	H	P	N	I	I	G	L	L
Template Known Secondary structure											T	T									S	S			S									.	.	.	.	.	.	T															T	T	B
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		305	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		A	V	V	.	T	Q	E	P	I	Y	I	I	T	E	Y	M	E	N	G	S	L	V	D	F	L	K	T	P	S	G	I	K	L	N	V	N	K	L	L	D	M	A	A	Q	I	A	E	G	M	A	F	I	E	E	Q	N	Y	I	H	R
Query Conservation					.
Alig confidence					.																										.	.
Template Conservation																															.	.
Template Sequence		D	A	F	G	H	K	S	N	I	S	L	V	F	D	F	M	E	T	D	L	E	V	I	I	K	D	N	S	L	.	.	V	L	T	P	S	H	I	K	A	Y	M	L	M	T	L	Q	G	L	E	Y	L	H	Q	H	W	I	L	H	R
Template Known Secondary structure							T	T										S								T	T			S	.	.	S			S	S																			T	T
Template Predicted Secondary structure																															.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.		.	.	.	420	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		D	L	R	A	A	N	I	L	V	S	D	T	L	S	C	K	I	A	D	F	G	L	A	R	L	I	E	D	N	E	Y	T	A	R	E	G	A	K	F	P	I	K	W	T	A	P	E	A	I	N	Y	G	T	.	F	T	I	K	S	D
Query Conservation																																																							.
Alig confidence																																									.	.													.
Template Conservation																																									.	.
Template Sequence		D	L	K	P	N	N	L	L	L	D	E	N	G	V	L	K	L	A	D	F	G	L	A	K	S	F	G	S	P	N	R	A	Y	H	Q	V	V	T	R	.	.	W	Y	R	A	P	E	L	L	F	G	A	R	M	Y	G	V	G	V	D
Template Known Secondary structure					G	G	G					T	T									G	G	G	S	T	T	T	S												.	.	T	T							T	T		S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	W	S	F	G	I	L	L	T	E	I	V	T	H	G	R	I	P	Y	P	G	M	T	N	P	E	V	I	Q	N	L	E	R	G	Y	R	M	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		M	W	A	V	G	C	I	L	A	E	L	L	L	.	R	V	P	F	L	P	G	D	S	D	L	D	Q	L	T	R	I	F	E	T	L	G	T	P	T	E	E	Q	W	P	D	M	C	S	L	P	D	Y	V	T	F	K	S	F	P	G
Template Known Secondary structure															.	S	S		S	S			S	S																	T	T	T	S	S	S	T	T	S	S	T	T
Template Predicted Secondary structure															.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
								462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	P	D	N	C	P	E	E	L	Y	H	L	M	M	L	C	W	K	E	R	P	E	D	R	P	T	F	D	Y	L	R	S	V	L	D	D	F	F	T	A	T	E	G	Q	Y	Q	P	Q	P
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																														.	.	.
Template Conservation																																					.	.	.
Template Sequence		I	P	L	H	H	I	F	S	A	A	G	D	D	L	L	D	L	I	Q	G	L	F	L	F	N	P	C	A	R	I	T	A	T	Q	A	.	.	.	L	K	M	K	Y	F	S	N	R	P	G	P	T	P	G	C
Template Known Secondary structure									T	T															S	S	T	T	T	S							.	.	.		T	S	G	G	G	T	S	S	S					S	S
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D