Job Description Q9JK95 Confidence 4.15% Date Wed Jul 10 14:03:56 BST 2013 Rank 65 Aligned Residues 165 % Identity 14% Template d1ffta_ SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 3.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	C	E	R	C	R	W	I	L	P	L	L	L	L	S	A	I	A	F	D	I	I	A	L	A	G	R	G	W	L	Q	S	S	N	H	I	Q	T	S	S	L	W	W	R	C	F	D	E	G	G	G	S	G	S	Y	D	D	G	C
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	F	P	F	L	N	N	L	S	F	W	F	T	V	V	G	V	I	L	V	N	V	S	L	G	V	G	E	F	A	Q	T	G	W	L	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	L	S	G	I	E	Y
Template Known Secondary structure			S	S																							T	T	T					S	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S	S		S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.															.	.	.	.	.	.	180	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		Q	S	L	M	E	Y	A	W	G	R	A	A	A	A	T	L	F	C	G	F	I	I	L	C	I	C	F	I	L	S	F	F	A	L	C	G	P	Q	.	M	L	V	F	L	R	V	I	G	G	L	L	A	L	A	A	I	F	Q	I	I
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		S	P	G	V	G	V	D	Y	W	I	W	S	L	Q	L	S	G	I	G	T	T	L	T	G	I	N	F	F	V	T	I	L	K	M	R	A	P	G	M	T	M	F	K	M	P	V	F	T	W	A	S	L	C	A	N	V	L	I	I	A
Template Known Secondary structure		T	T																																	S		T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150													.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	V	I	Y	P	V	K	Y	T	Q	T	F	R	L	H	D	N	P	A	V	N	Y	I	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	W	A	Y	G	F	G	W	A	A	T	I	I	L	I	G	C	S	F	F	F	C	C
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	P	I	L	T	V	T	V	A	L	L	T	L	D	R	Y	L	G	T	H	F	F	T	N	D	M	G	G	N	M	M	M	Y	I	N	L	I	W	A	W	G	H	P	E	V	Y	I	L	I	L	P	V	F	G	V	F	S	E	I
Template Known Secondary structure		T	T																				S	S		T	T	T	T																					T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	N	Y	E	D	D	L	L	G	A	A	K	P	R	Y	F	Y
Query Conservation
Alig confidence						.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		A	A	T	F	.	.	.	.	.	.	S	R	K	R	L	F	G	Y
Template Known Secondary structure						.	.	.	.	.	.		T	S			S	S
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		302	.	.	.							.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D