Job Description Q9JK95 Confidence 3.91% Date Wed Jul 10 14:03:56 BST 2013 Rank 76 Aligned Residues 107 % Identity 11% Template c4apsB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:di-or tripeptide h+ symporter; PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation. Resolution 3.30 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	E	Y	A	W	G	R	A	A	A	A	T	L	F	C	G	F	I	I	L	C	I	C	F	I	L	S	F	F	A	L	C	G	P	Q	M	L	V	F	L	R	V	I	G	G	L	L	A	L	A	A	I	F	Q	I	I	S	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	G	A	S	A	L	F	G	S	I	I	L	I	I	I	G	T	G	F	L	K	P	N	V	S	T	L	V	G	T	L	Y	D	E	H	D	R	R	R	D	A	G	F	S	I	F	V	F	G	I	N	L	G	A	F	I	A	P	L
Template Known Secondary structure				S	T	T																												S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	P	V	K	Y	T	Q	T	F	R	L	H	D	N	P	A	V	N	Y	I	Y	N	W	A	Y	G	F	G	W	A	A	T	I	I	L	I	G	C	S	F	F	F	C	C	L	P	N	Y	E	D	D	L	L	G	A	A	K	P	R
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	G	A	A	Q	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	Y	H	V	A	F	S	L	A	A	I	G	M	F	I	G	L	L	V	Y	Y	F	G	G	K	K	T	L	D	P	H	Y	L	R	P	T	D	P
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	S																									T	T	T			S			S			S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.														.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D