Job Description Q9JK95 Confidence 4.44% Date Wed Jul 10 14:03:56 BST 2013 Rank 56 Aligned Residues 163 % Identity 16% Template c2yevA_ PDB info PDB header:electron transport Chain: A: PDB Molecule:cytochrome c oxidase polypeptide i+iii; PDBTitle: structure of caa3-type cytochrome oxidase Resolution 2.36 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	C	E	R	C	R	W	I	L	P	L	L	L	L	S	A	I	A	F	D	I	I	A	L	A	G	R	G	W	L	Q	S	S	N	H	I	Q	T	S	S	L	W	W	R	C	F	D	E	G	G	G	S	G	S	Y	D	D	G	C
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	L	P	R	V	N	A	F	S	Y	W	A	F	L	G	A	I	V	L	A	L	M	S	Y	F	F	P	G	G	A	P	S	V	G	W	T	F	Y	Y	P	F	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S																						G	G	G	S	T	T		S			S	T	T	T	T		T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		Q	S	L	M	E	Y	A	W	G	R	A	A	A	A	T	L	F	C	G	F	I	I	L	C	I	C	F	I	L	S	F	F	A	L	C	G	P	Q	.	M	L	V	F	L	R	V	I	G	G	L	L	A	L	A	A	I	F	Q	I	I
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		Q	S	E	S	G	V	D	F	Y	L	A	A	I	L	L	L	G	F	S	S	L	L	G	N	A	N	F	V	A	T	I	Y	N	L	R	A	Q	G	M	S	L	W	K	M	P	I	Y	V	W	S	V	F	A	A	S	V	L	N	L	F
Template Known Secondary structure					S	S																														S		T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.													.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	V	I	Y	P	V	K	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	F	R	L	H	D	N	P	A	V	N	Y	I	Y	N	W	A	Y	G	F	G	W	A	A	T	I	I	L	I	G	C	S	F	F	F	C	C
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	A	G	L	T	A	A	T	L	L	V	L	L	E	R	K	I	G	L	S	W	F	N	P	A	V	G	G	D	P	V	L	F	Q	Q	F	F	W	F	Y	S	H	P	T	V	Y	V	M	L	L	P	Y	L	G	I	L	A	E	V
Template Known Secondary structure			T																				S	S		G	G	G	T															T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	N	Y	E	D	D	L	L	G	A	A	K	P	R	Y	F	Y
Query Conservation
Alig confidence						.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		A	S	T	F	.	.	.	.	.	.	A	R	K	P	L	F	G	Y
Template Known Secondary structure						.	.	.	.	.	.		T	S			T	T
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		268	.	270	.							.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D