Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.74%DateTue Jul 30 13:06:17 BST 2013
Rank26Aligned Residues125
% Identity27%Templatec1cvjF_
PDB info PDB header:gene regulation/rnaChain: F: PDB Molecule:polyadenylate binding protein 1; PDBTitle: x-ray crystal structure of the poly(a)-binding protein in2 complex with polyadenylate rna
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   135....140.........150.........160.........170...... ...180.........190...
Predicted Secondary structure 

















.







Query SS confidence 









































.
















Query Sequence  NVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD. DQGNLKGDGLCCYLKKE
Query Conservation   


  

 
 
  
    
   
 
           
   
.  
  

   
 
   
Alig confidence 



























........





.
















Template Conservation 







   


 
   
   
 
  ........                

 
    
Template Sequence  SLYVGDLHPDVTEAMLYEKFSPAGPILS. . . . . . . . IRVCRDMITRRSLGYAYVNFQQPA
Template Known Secondary structure 


TT

GGGS
........
TTT

SS
Template Predicted Secondary structure 











........












Template SS confidence 



























































   12.......20.........30......... 40.........50.........60...
 
   194.....200.........210.........220.........230.........240.........250...
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  SVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPE
Query Conservation 
   

  
         
 
  
 
                                  
Alig confidence 
























...................................
Template Conservation   
  
             
      ...................................
Template Sequence  DAERALDTMNFDVIKGKPVRIMWSQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTSSS
TT


...................................
Template Predicted Secondary structure 











...................................
Template SS confidence 



























































   64.....70.........80........
 
   254.....260.........270.........280.........290.........300.........310...
Predicted Secondary structure 
























Query SS confidence 



























































Query Sequence  RRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPD
Query Conservation               
   
 
                 

       
 
  
 
      
Alig confidence  ......












................



















..


Template Conservation  ......             ................       
   
 
    
 ..  
Template Sequence  . . . . . . RDPSLRKSGVGNI. . . . . . . . . . . . . . . . NKALYDTFSAFGNILSCKVV. . CSK
Template Known Secondary structure  ......

TT
TTB
................
TTTTTTTTTT





..


Template Predicted Secondary structure  ......












................




..


Template SS confidence 



























































   8990.........100. ........110.........120. ...
 
   314.....320......
Predicted Secondary structure 

Query SS confidence 












Query Sequence  GVASVSFREPEEA
Query Conservation 
   
 
     
Alig confidence 












Template Conservation 
 


 
   
 
Template Sequence  GYGFVHFETQEVF
Template Known Secondary structure  S



SS



Template Predicted Secondary structure 


Template SS confidence 












   139140.........150.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D