Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.57%DateTue Jul 30 13:06:17 BST 2013
Rank125Aligned Residues86
% Identity21%Templated1rk8a_
SCOP infoFerredoxin-like RNA-binding domain, RBD Canonical RBD
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   128.130.........140.........150.........160.........170...... ...180......
Predicted Secondary structure 
























.





Query SS confidence 
















































.









Query Sequence  VEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD. DQGNLKGDGL
Query Conservation        
 


  

 
 
  
    
   
 
           
   
.  
  

   
Alig confidence 

































........






.









Template Conservation 
       


 


   
   
   
   
 
 ........                

Template Sequence  PQRSVGWILFVTSIHEEAQEDEIQEKFCDYGEIK. . . . . . . . NIHLNLDRRTGFSKGYAL
Template Known Secondary structure 





S

TT

GGGS
........
TTTSS
Template Predicted Secondary structure 



















........











Template SS confidence 



























































   66...70.........80.........90......... 100.........110.......
 
   187..190.........200.........210.........220.
Predicted Secondary structure 











Query SS confidence 


































Query Sequence  CCYLKKESVELALKLLDEDEIRGYKLHVEVAKFQL
Query Conservation 
 
   

   

  
         
 
  
 
  
Alig confidence 


































Template Conservation 
 
     
  
   
 
  
 

 
 
  
  

Template Sequence  VEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG
Template Known Secondary structure  SSTT
TT
S



Template Predicted Secondary structure 









Template SS confidence 


































   119120.........130.........140.........150...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D