Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.34%DateTue Jul 30 13:06:17 BST 2013
Rank214Aligned Residues78
% Identity28%Templatec2dnlA_
PDB info PDB header:translationChain: A: PDB Molecule:cytoplasmic polyadenylation element binding PDBTitle: solution structure of rna binding domain in cytoplasmic2 polyadenylation element binding protein 3
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   134.....140.........150.........160.........170.........180.........190...
Predicted Secondary structure 


























Query SS confidence 



























































Query Sequence  TNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCYLKKE
Query Conservation 
 


  

 
 
  
    
   
 
           
   
  
  

   
 
   
Alig confidence 































.....






















Template Conservation    


  

   

  
   
  

 
    
.....        
  





 
    
Template Sequence  RKVFVGGLPPDIDEDEITASFRRFGPLVVDWP. . . . . HKAESKSYFPPKGYAFLLFQEES
Template Known Secondary structure 




TT

TTTT




T.....TSSSS


S
TTS

SS
Template Predicted Secondary structure 












.....












Template SS confidence 



























































   427..430.........440.........450........ .460.........470.........480.
 
   194.....200. ........210......
Predicted Secondary structure  ...........






Query SS confidence 







. . . . . . . . . . .














Query Sequence  SVELALKL. . . . . . . . . . . LDEDEIRGYKLHVEV
Query Conservation 
   

  ...........
         
 
  
Alig confidence 







...........














Template Conservation 

  

             
       
  

 
Template Sequence  SVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRP
Template Known Secondary structure  STT

SSS
S
Template Predicted Secondary structure 












Template SS confidence 

































   482.......490.........500.........510.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D