Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.01%DateTue Jul 30 13:06:17 BST 2013
Rank223Aligned Residues82
% Identity15%Templatec2d9oA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:dnaj (hsp40) homolog, subfamily c, member 17; PDBTitle: solution structure of rna binding domain in hypothetical2 protein flj10634
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   133...... 140.........150.........160.........170.........180.....
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Query Sequence  NTNVYVS. . . . . . . GLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDG
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Template Sequence  TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN. . . . . . . . LVLSSKK. . . . PGTA
Template Known Secondary structure  S




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S


S

TTS
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   170.........180.........190.........200...... ...210... ....
 
   186...190.........200.........210.........220........
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Query Sequence  LCCYLKKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDAS
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Template Sequence  VVEFATVKAAELAVQNEVG. . LVDNPLKISWLEGQPQDASGPS
Template Known Secondary structure  S
T

B..
SSSB

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   218.220.........230...... ...240.........250........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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