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Job Description | Q8BGC0 | Confidence | 99.65% | Date | Tue Jul 30 13:06:17 BST 2013 |
Rank | 50 | Aligned Residues | 78 |
% Identity | 21% | Template | c3cw18_ |
PDB info |
PDB header:splicing | Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda; | PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop;
PDBTitle: crystal structure of human spliceosomal u1 snrnp
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Resolution | 5.49 Å |
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133 | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
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Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
N | T | N | V | Y | V | S | G | L | P | P | D | I | T | V | D | E | F | I | Q | L | M | S | K | F | G | I | I | M | R | D | P | Q | T | E | E | F | K | V | K | L | Y | K | D | . |
D | Q | G | N | L | K | G | D | G | L | C | C | Y | L | K |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
W | K | T | L | F | V | A | R | V | N | Y | D | T | T | E | S | K | L | R | R | E | F | E | V | Y | G | P | I | K | R | . |
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I | H | M | V | Y | S | K | R | S | G | K | P | R | G | Y | A | F | I | E | Y | E | H |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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689 | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | |
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. | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 |
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192 | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
K | E | S | V | E | L | A | L | K | L | L | D | E | D | E | I | R | G | Y | K | L | H | V | E | V | A | K |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
E | R | D | M | H | S | A | Y | K | H | A | D | G | K | K | I | D | G | R | R | V | L | V | D | V | E | R |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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754 | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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Phyre2 is part of Genome3D |
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