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Job DescriptionQ8BGC0
Confidence99.80%DateTue Jul 30 13:06:17 BST 2013
Rank17Aligned Residues157
% Identity21%Templatec3md3A_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the first two rrm domains of yeast poly(u)2 binding protein (pub1)
Resolution2.70 Å
Model Dimensions (Å)X:60.603 Y:54.100 Z:39.457

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   135....140.........150.........160.........170.........180.........190....
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Query Sequence  NVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCYLKKES
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Template Sequence  VLYVGNLDKAITEDILKQYFQVGGPIAN. . . . . . . . IKIMIDK. NKNVNYAFVEYHQSHD
Template Known Secondary structure  TT

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   76...80.........90.........100... ......110 .........120......
 
   195....200.........210.........220.........230.........240.........250....
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Query Sequence  VELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPER
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Template Sequence  ANIALQTLNGKQIENNIVKINWAF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
TT


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   128.130.........140.........150.
 
   255....260.........270.........280.........290.........300........ .310
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Query Sequence  RAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF. . . . DR
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Template Sequence  QSQQSSSDDTFNLFVGDLNVNVD. . . . . . . . . . . DETLRNAFKDFPSYLSGHVMWDMQTG
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TT
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TT

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   152.......160.........170.... .....180.........190.........200
 
   311........320.........330.........340.......
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Query Sequence  HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQA
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Template Sequence  SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW
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   201........210.........220.........230.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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