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Job DescriptionQ8BGC0
Confidence99.85%DateTue Jul 30 13:06:17 BST 2013
Rank11Aligned Residues167
% Identity19%Templatec2qfjA_
PDB info PDB header:transcription repressor/dnaChain: A: PDB Molecule:fbp-interacting repressor; PDBTitle: crystal structure of first two rrm domains of fir bound to2 ssdna from a portion of fuse
Resolution2.10 Å
Model Dimensions (Å)X:50.655 Y:53.882 Z:39.929

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   133......140.........150.........160.........170.........180.........190..
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Query Sequence  NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCYLKK
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Template Sequence  MSRVYVGSIYYELGEDTIRQAFAPFGPIKS. . . . . . . . IDMSWD. VTKHKGFAFVEYEVP
Template Known Secondary structure  T


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   111........120.........130.........140 ...... ...150.........160.
 
   193......200.........210.........220.........230.........240.........250..
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Query Sequence  ESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRP
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Template Sequence  EAAQLALEQMNSVMLGRNIKVGRPSN. . . . . . . . . . . . . . IGQAQPIIDQLAEEARAFNR
Template Known Secondary structure  SS








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   164.....170.........180......... 190.........200.........
 
   253......260.........270.........280.........290.........300........
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Query Sequence  ERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF. . . .
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Template Sequence  . . . . . . . . . . . . . . IYVASV. . . . . . . . . . . HQDLSDDDIKSVFEAFGKIKSATLARDPT
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   211..... ...220.........230.........240.....
 
   309310.........320.........330.........340.......
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Query Sequence  DRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQA
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Template Sequence  TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK
Template Known Secondary structure  T

SSTT
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   246...250.........260.........270.........280....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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