Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.58%DateTue Jul 30 13:06:17 BST 2013
Rank113Aligned Residues76
% Identity16%Templatec3md1B_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1)
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   134.....140.........150.........160.........170...... ...180.........190..
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Query Sequence  TNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD. DQGNLKGDGLCCYLKK
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Template Sequence  FNLFVGDLNVNVDDETLRNAFKDFPSYLS. . . . . . . . GHVMWDMQTGSSRGYGFVSFTSQ
Template Known Secondary structure  S

TT

TTSTT........
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   162.......170.........180.........190 .........200.........210...
 
   193......200.........210.......
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Query Sequence  ESVELALKLLDEDEIRGYKLHVEVA
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Template Sequence  DDAQNAMDSMQGQDLNGRPLRINWA
Template Known Secondary structure  TT
TT

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   214.....220.........230........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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