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Job DescriptionQ8BGC0
Confidence99.94%DateTue Jul 30 13:06:17 BST 2013
Rank2Aligned Residues192
% Identity16%Templatec3s01A_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution
Resolution2.15 Å
Model Dimensions (Å)X:53.097 Y:44.108 Z:39.982

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RNTNVYVSGLPPDI. TVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCYL
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Template Sequence  DSPVLXVYGLDQSKXNCDRVFNVFCLYGNVEK. . . . . . . . VKFXKS. . . . KPGAAXVEXA
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   377..380.........390.........400........ .410.... .....420....
 
   191........200.........210.........220.........230.........240.........250
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Query Sequence  KKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDW
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Template Sequence  DGYAVDRAITHLNNNFXFGQKXNVCVSKQPAIXPGQSYGLEDGSCSYKDFSESRNNRFST
Template Known Secondary structure  STT
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   425....430.........440.........450.........460.........470.........480....
 
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Query Sequence  RPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF. D
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Template Sequence  PEQ. AAKNRIQHPSNVLHFFNA. . . . . . . . . . . PLEVTEENFFEICDELGVKRPTSVKVF
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   485.. ..490.........500..... ....510.........520.........530..
 
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Query Sequence  RHPDGVASVSFREPEEADHCIQTLDGRWFGGRQ. . . . . . ITAQA
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Template Sequence  SGRSSSGLLEWDSKSDALETLGFLNHYQXKNPNGPYPYTLKLCF
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   533......540.........550.........560.........570......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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