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Job DescriptionQ8BGC0
Confidence99.92%DateTue Jul 30 13:06:17 BST 2013
Rank6Aligned Residues151
% Identity29%Templatec3sdeB_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:non-pou domain-containing octamer-binding protein; PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono
Resolution1.90 Å
Model Dimensions (Å)X:59.393 Y:54.375 Z:36.202

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   131........140.........150.........160.........170.........180.........190
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Query Sequence  DRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCYL
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Template Sequence  TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE. . . . . . . . VFI. . . . . HKDKGFGFIRLE
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   71........80.........90.........100.. ... ....110.......
 
   191........200.........210.........220.........230.........240.........250
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Query Sequence  KKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDW
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Template Sequence  TRTLAEIAKVELDNMPLRGKQLRVRFAC. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  STT
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   118.120.........130.........140.....
 
   251........260.........270.........280.........290.........300........
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Query Sequence  RPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF. .
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Template Sequence  . . . . . . . . . . . . HSASLTVRNLPQYVS. . . . . . . . . . . NELLEEAFSVFGQVERAVVIVD
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   146...150.........160 .........170.........180..
 
   309310.........320.........330.........340 .........
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Query Sequence  . DRHPDGVASVSFREPEEADHCIQTLDGRWFGG. . . . RQITAQAWD
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Template Sequence  DRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMD
Template Known Secondary structure  TTS
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   183......190.........200.........210.........220........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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