Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.76%DateTue Jul 30 13:06:17 BST 2013
Rank22Aligned Residues162
% Identity15%Templatec2g4bA_
PDB info PDB header:rna binding protein/rnaChain: A: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: structure of u2af65 variant with polyuridine tract
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   134.....140.........150.........160.........170.........180.........190...
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Query Sequence  TNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCYLKKE
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Template Sequence  RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ. . INQDKNFAFLEFRSVD
Template Known Secondary structure  GS

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   149150.........160.........170.........180.........190 .........200......
 
   194.....200.........210.........220.........230.........240.........250...
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Query Sequence  SVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPE
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Template Sequence  ETTQAMAFDGIIFQGQSLKIRRPHD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGGTT
TT


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   207..210.........220.........230.
 
   254.....260.........270.........280.........290.........300........ .
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Query Sequence  RRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF. . . . D
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Template Sequence  . . . . YQPLPGAHKLFIGGL. . . . . . . . . . . PNYLNDDQVKELLTSFGPLKAFNLVKDSAT
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   232.......240...... ...250.........260.........270......
 
   310.........320.........330.........340.......
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Query Sequence  RHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQA
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Template Sequence  GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR
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   297..300.........310.........320.........330....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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