Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.79%DateTue Jul 30 13:06:17 BST 2013
Rank20Aligned Residues157
% Identity20%Templatec2cjkA_
PDB info PDB header:rna-binding proteinChain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 4; PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna
ResolutionUNK
Model Dimensions (Å)X:59.514 Y:45.411 Z:42.545

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   131........140.........150.........160.........170...... ...180.........
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Query Sequence  DRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD. DQGNLKGDGLCCY
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Template Sequence  KESCKMFIGGLNWDTTEDNLREYFGKYGTVTD. . . . . . . . LKIMKDPATGRSRGFGFLSF
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   156...160.........170.........180....... ..190.........200.......
 
   190.........200.........210.........220.........230.........240.........
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Query Sequence  LKKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLD
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Template Sequence  EKPSSVDEVVKTQHILDGKVIDPKRAIPR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSTS

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   208.210.........220.........230......
 
   250.........260.........270.........280.........290.........300........
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Query Sequence  WRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF.
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Template Sequence  . . . . . . . . . DEQDKTGKIFVGGI. . . . . . . . . . . GPDVRPKEFEEFFSQWGTIIDAQLML
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   237..240.........250 .........260.........270......
 
   309310.........320.........330.........340.......
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Query Sequence  . . . DRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQA
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Template Sequence  DKDTGQSRGFGFVTYDSADAVDRVCQ. NKFIDFKDRKIEIKR
Template Known Secondary structure  SSSSSTTSSS.
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   277..280.........290.........300.. .......310.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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