 |
Job Description | Q8BGC0 | Confidence | 99.62% | Date | Tue Jul 30 13:06:17 BST 2013 |
Rank | 69 | Aligned Residues | 75 |
% Identity | 24% | Template | c4f26A_ |
PDB info |
PDB header:translation | Chain: A: PDB Molecule:polyadenylate-binding protein 1; |
PDBTitle: crystal structure of the second rrm domain of human pabpc1 a ph 9.0
|
Resolution | 2.00 Å |
|
 |
  |   |
135 | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | V | Y | V | S | G | L | P | P | D | I | T | V | D | E | F | I | Q | L | M | S | K | F | G | I | I | M | R | D | P | Q | T | E | E | F | K | V | K | L | Y | K | D | D | Q | G | N | L | K | G | D | G | L | C | C | Y | L | K | K | E | S |
Query Conservation |   |
  |
|
|
|   |   |
|
|   |
|   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|
|
|   |   |   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |
|   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |
Template Sequence |   |
N | I | F | I | K | N | L | D | K | S | I | D | N | K | A | L | Y | D | T | F | S | A | F | G | N | I | L | S | . |
. |
. |
. |
. |
. |
. |
. |
C | K | V | V | C | D | E | . |
N | G | S | K | G | Y | G | F | V | H | F | E | T | Q | E | A |
Template Known Secondary structure |   |
 |  |  |  |  | S |
|
| T | T |
|
|  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  | T | . | T |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
| . |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 130 | . | . | . | . | |
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
  |
  |   |
195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | E | L | A | L | K | L | L | D | E | D | E | I | R | G | Y | K | L | H | V | E | V | A | K |
Query Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |
|   |
|   |   |
|   |
|   |   |
|   |
|   |   |
|
|
Template Sequence |   |
A | E | R | A | I | E | K | M | N | G | M | L | L | N | D | R | K | V | F | V | G | R | F | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | T |
|  |  | T | T |  |  |
|  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
151 | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|