Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.88%DateTue Jul 30 13:06:17 BST 2013
Rank8Aligned Residues176
% Identity15%Templated1u1qa_
SCOP infoFerredoxin-like RNA-binding domain, RBD Canonical RBD
Resolution1.80
Model Dimensions (Å)X:55.066 Y:60.655 Z:38.897

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   129130.........140.........150.........160.........170...... ...180.......
Predicted Secondary structure 























.





Query SS confidence 















































.










Query Sequence  EEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD. DQGNLKGDGLC
Query Conservation       
 


  

 
 
  
    
   
 
           
   
.  
  

   
Alig confidence 

































........





.










Template Conservation         


 


   

  
   
  

 
  ........                  
Template Sequence  EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTD. . . . . . . . CVVMRDPNTKRSRGFGFV
Template Known Secondary structure 

S

TT

GGGS
........
TTT

Template Predicted Secondary structure 
















........









Template SS confidence 



























































   910.........20.........30.........40.. .......50.........60
 
   188.190.........200.........210.........220.........230.........240.......
Predicted Secondary structure 























Query SS confidence 



























































Query Sequence  CYLKKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQ
Query Conservation   
   

   

  
         
 
  
 
                            
Alig confidence 




























...............................
Template Conservation   
     
  
                  ...............................
Template Sequence  TYATVEEVDAAMNARPHKVDGRVVEPKRA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SST
S
TT

...............................
Template Predicted Secondary structure 














...............................
Template SS confidence 



























































   61........70.........80.........
 
   248.250.........260.........270.........280.........290.........300.......
Predicted Secondary structure 

























Query SS confidence 



























































Query Sequence  LDWRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL
Query Conservation                     
   
 
                 

       
 
  
 
Alig confidence  ..






















...........























Template Conservation  ..                       ...........                        
Template Sequence  . . VSREDSQRPGAHLTVKKIFVGGI. . . . . . . . . . . KEDTEEHHLRDYFEQYGKIEVIEI
Template Known Secondary structure  ..

TTGGGSTTTT


S

...........
TT

GGGS
Template Predicted Secondary structure  ..






















...........











Template SS confidence 



























































   90.........100.........110.. .......120.........130......
 
   308 .310.........320.........330.........340.........350.......
Predicted Secondary structure  ....



















Query SS confidence 
. . . .
















































Query Sequence  F. . . . DRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWDGTTDYQVE
Query Conservation   ....     
   
 
     
   
   


 
 

 
 
   

       
Alig confidence 
....






















.
























Template Conservation              


 
   
 
  

 .     
 

 
 
  
  
     
Template Sequence  MTDRGSGKKRGFAFVTFDDHDSVDKIVI. QKYHTVNGHNCEVRKALSKQEMASA
Template Known Secondary structure 
TTT

S
T.SS
TT


T
Template Predicted Secondary structure 












.








Template SS confidence 





















































   137..140.........150.........160.... .....170.........180.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D