 |
Job Description | Q8BGC0 | Confidence | 99.50% | Date | Tue Jul 30 13:06:17 BST 2013 |
Rank | 175 | Aligned Residues | 88 |
% Identity | 22% | Template | c2hvzA_ |
PDB info |
PDB header:rna binding protein | Chain: A: PDB Molecule:splicing factor, arginine/serine-rich 7; |
PDBTitle: solution structure of the rrm domain of sr rich factor 9g8
|
Resolution | UNK |
|
 |
  |   |
135 | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | V | Y | V | S | G | L | P | P | D | I | T | V | D | E | F | I | Q | L | M | S | K | F | G | I | I | M | R | D | P | Q | T | E | E | F | K | V | K | L | Y | K | D | D | Q | G | N | L | K | G | D | G | L | C | C | Y | L | K | K | E | S |
Query Conservation |   |
  |
|
|
|   |   |
|
|   |
|   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|
|   |   |   |   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |
|   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |
|
|
|   |
|   |   |   |   |   |
Template Sequence |   |
K | V | Y | V | G | N | L | G | T | G | A | G | K | G | E | L | E | R | A | F | S | Y | Y | G | P | L | R | . |
. |
. |
. |
. |
. |
. |
. |
T | V | W | I | A | R | N | . |
. |
. |
. |
P | P | G | F | A | F | V | E | F | E | D | P | R | D |
Template Known Secondary structure |   |
 |  |  |  |  |
|
|
| S | S |
| S |  |  |  |  |  |  |  |  |  |  |  |
|
|
| S | . | . | . | . | . | . | . | . |  |  |  |  |  | S | S | . | . | . | . | S | S | S |  |  |  |  |  |
| S | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | 30 | . | . | . | . | . | |
|
|
|
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . |
  |
  |   |
195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | E | L | A | L | K | L | L | D | E | D | E | I | R | G | Y | K | L | H | V | E | V | A | K | F | Q | L | K | G | E | Y | D | A | S | K | K | K | K | K | C |
Query Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |   |
|   |   |
|   |
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | E | D | A | V | R | G | L | D | G | K | V | I | C | G | S | R | V | R | V | E | L | S | T | G | M | P | R | R | S | R | F | D | R | P | P | A | R | R | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | S |
| S | S | S |
|
|
|  |  |  |  | S | S | S |
|
|
| S | S |
|
|
| S |
|
|
| S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|