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Job DescriptionQ8BGC0
Confidence99.94%DateTue Jul 30 13:06:17 BST 2013
Rank3Aligned Residues194
% Identity19%Templatec2adcA_
PDB info PDB header:rna binding protein/rnaChain: A: PDB Molecule:polypyrimidine tract-binding protein 1; PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna
ResolutionUNK
Model Dimensions (Å)X:46.901 Y:61.542 Z:41.751

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   128.130.........140. ........150.........160.........170.........180......
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Query Sequence  VEEDRNTNVYVSGL. PPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGL
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Template Sequence  LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ. . . . . . . . RVKILFNK. . . . KENAL
Template Known Secondary structure  GG



SS

TTT

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   331........340.........350.........360..... ....370... .....
 
   187..190.........200.........210.........220.........230.........240......
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Query Sequence  CCYLKKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQK
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Template Sequence  VQMADGNQAQLAMSHLNGHKLHGKPIRITLSK. . . HQNVQLPREGQEDQGLTKDYGNSPL
Template Known Secondary structure  S
TT
B
SSSB


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   379380.........390.........400.........410 .........420.........430.....
 
   247..250.........260.........270.........280.........290.........300......
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Query Sequence  QLDWRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLL
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Template Sequence  HRFKKPGSKNFQNIFPPSATLHLSNI. . . . . . . . . . . PPSVSEEDLKVLFSSNGGVVKGF
Template Known Secondary structure 



STTSGGGTT


S
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TT

TTS

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   436...440.........450.........460. ........470.........480....
 
   307..310.........320.........330........ .340.......
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Query Sequence  LFDRHPDGVASVSFREPEEADHCIQTLDGRWF. GGRQITAQA
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Template Sequence  KFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF
Template Known Secondary structure 
SSSTT
SSTT
BSSSS
B
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   485....490.........500.........510.........520......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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