Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.71%DateTue Jul 30 13:06:17 BST 2013
Rank32Aligned Residues119
% Identity20%Templated1u6fa1
SCOP infoFerredoxin-like RNA-binding domain, RBD Canonical RBD
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.........160........
Predicted Secondary structure 






































Query SS confidence 



























































Query Sequence  TPDSKRKGEKRKAESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEE
Query Conservation                           
 


  

 
 
  
    
   
 
        
Alig confidence 




















































.......
Template Conservation                             
 
 

    

  
   
   
 
 .......
Template Sequence  QLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIE. . . . . . .
Template Known Secondary structure 

SS
SSS
TT


SS
SS

TTTTSS
STT

S
.......
Template Predicted Secondary structure 
























.......
Template SS confidence 



























































   18.20.........30.........40.........50.........60.........70
 
   169170...... ...180.........190.........200.........210.........220.......
Predicted Secondary structure 
.























Query SS confidence 







.


















































Query Sequence  FKVKLYKD. DQGNLKGDGLCCYLKKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDA
Query Conservation     
   
.  
  

   
 
   

   

  
         
 
  
 
        
Alig confidence  .






.


















































Template Conservation  .          
   
 


 
     
  

  


  
 

 
 
  
     
    
Template Sequence  . SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIA
Template Known Secondary structure  .TTTTSSTTT
SS
SS






SS
Template Predicted Secondary structure  .
































Template SS confidence 



























































   71........80.........90.........100.........110.........120.........
 
   228.230.....
Predicted Secondary structure 





Query SS confidence 







Query Sequence  SKKKKKCK
Query Conservation          
Alig confidence 







Template Conservation     
    
Template Sequence  GAVGDGNG
Template Known Secondary structure 







Template Predicted Secondary structure 







Template SS confidence 







   130.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D