Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.65%DateTue Jul 30 13:06:17 BST 2013
Rank50Aligned Residues78
% Identity21%Templatec3cw18_
PDB info PDB header:splicingChain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda;PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp
Resolution5.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   133......140.........150.........160.........170...... ...180.........190.
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Query Sequence  NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD. DQGNLKGDGLCCYLK
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Template Sequence  WKTLFVARVNYDTTESKLRREFEVYGPIKR. . . . . . . . IHMVYSKRSGKPRGYAFIEYEH
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   689690.........700.........710........ .720.........730.........740
 
   192.......200.........210........
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Query Sequence  KESVELALKLLDEDEIRGYKLHVEVAK
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Template Sequence  ERDMHSAYKHADGKKIDGRRVLVDVER
Template Known Secondary structure  TTSSS
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   754.....760.........770.........780
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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