Return to main results Retrieve Phyre Job Id

Job DescriptionQ8BGC0
Confidence99.62%DateTue Jul 30 13:06:17 BST 2013
Rank60Aligned Residues93
% Identity29%Templatec2dnzA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:probable rna-binding protein 23; PDBTitle: solution structure of the second rna binding domain of rna2 binding motif protein 23
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   130.........140.........150.........160.........170...... ...180........
Predicted Secondary structure 






















.





Query SS confidence 














































.











Query Sequence  EDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD. DQGNLKGDGLCC
Query Conservation      
 


  

 
 
  
    
   
 
           
   
.  
  

   
 
Alig confidence 
































........





.











Template Conservation       

 
 


   

  
   
   
 
  ........                

 
Template Sequence  SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDN. . . . . . . . IVLMKDSDTGRSKGYGFIT
Template Known Secondary structure 
S


S

TT

TTTS
........

SSS



S
Template Predicted Secondary structure 
















........









Template SS confidence 



























































   225....230.........240.........250....... ..260.........270......
 
   189190.........200.........210.........220.........230
Predicted Secondary structure 




















Query SS confidence 









































Query Sequence  YLKKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKK
Query Conservation 
   

   

  
         
 
  
 
           
Alig confidence 









































Template Conservation 
     
  
   
    
 
  
 
  
         
  
Template Sequence  FSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGSGPSSG
Template Known Secondary structure  S
TT

SSSS

SS











Template Predicted Secondary structure 




















Template SS confidence 









































   277..280.........290.........300.........310........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D