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Job DescriptionQ8BGC0
Confidence99.83%DateTue Jul 30 13:06:17 BST 2013
Rank14Aligned Residues170
% Identity22%Templatec2dhsA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:cug triplet repeat rna-binding protein 1; PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna
ResolutionUNK
Model Dimensions (Å)X:79.312 Y:46.092 Z:37.047

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   127..130.........140.........150.........160.........170...... ... 180...
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Query Sequence  HVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD. DQG. . NLKG
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Template Sequence  DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYE. . . . . . . . INVLRDRSQNPPQSKG
Template Known Secondary structure  S




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   910.........20.........30.........40.... .....50.........60
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  DGLCCYLKKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSL
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Template Sequence  CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRK. . . . . . . . . . .
Template Known Secondary structure  S
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   61........70.........80.........90.........100.........
 
   244.....250.........260.........270.........280.........290.........300...
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Query Sequence  QQKQLDWRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . LFIGMI. . . . . . . . . . . SKKCTENDIRVMFSSFGQIE
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   110..... ....120.........130.....
 
   304.... .310.........320.........330........ .340.........
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Query Sequence  KLLLF. . . DRHPDGVASVSFREPEEADHCIQTLDGRWF. . . GGRQITAQAWD
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Template Sequence  ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD
Template Known Secondary structure  TTTSSTTT

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   136...140.........150.........160.........170.........180.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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