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Job DescriptionQ8BGC0
Confidence99.87%DateTue Jul 30 13:06:17 BST 2013
Rank10Aligned Residues181
% Identity13%Templatec2yh0A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: solution structure of the closed conformation of human u2af65 tandem2 rrm1 and rrm2 domains
ResolutionUNK
Model Dimensions (Å)X:61.480 Y:55.360 Z:38.818

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   135....140.........150.........160.........170.........180.........190....
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Query Sequence  NVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCYLKKES
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Template Sequence  RLYVGNIPFGITEEAMMDFFNAQMRLGG. . LTQAPGNPVLAVQINQDKNFAFLEFRSVDE
Template Known Secondary structure  S

TT

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SSSS
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   150.........160.........170....... ..180.........190.........200.......
 
   195....200.........210.........220.........230.........240.........250....
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Query Sequence  VELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPER
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Template Sequence  TTQAMA. FDGIIFQGQSLKIRRPHDYQPLPGMSENPSV. . . . . . . . . . . . . . . . . . YVPG
Template Known Secondary structure  GG.GTTTT









SSS
SS
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TT
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   208.210... ......220.........230.........240.... ....
 
   255....260.........270.........280.........290.........300........ .310
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Query Sequence  RAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF. . . . DR
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Template Sequence  VVSTVVPDSAHKLFIGGL. . . . . . . . . . . PNYLNDDQVKELLTSFGPLKAFNLVKDSATG
Template Known Secondary structure  SS


SS





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TT

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   249250.........260...... ...270.........280.........290.......
 
   311........320.........330.........340.......
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Query Sequence  HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQA
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Template Sequence  LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR
Template Known Secondary structure  SSSSSTT
TT
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   298.300.........310.........320.........330....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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