Job Description P16277 Confidence 100.00% Date Tue Jul 30 13:14:40 BST 2013 Rank 205 Aligned Residues 263 % Identity 17% Template c3op5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: human vaccinia-related kinase 1 Resolution 2.40 Å

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		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																	.	.												.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.												.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		E	I	P	R	Q	S	L	K	L	V	R	K	L	G	S	.	.	G	Q	F	G	E	V	W	M	G	Y	Y	.	.	.	.	.	.	K	N	N	M	K	V	A	I	K	T	L	K	E	G	T	M	S	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.												.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Alig confidence																	.	.												.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	I	T	D	M	A	A	A	A	W	K	V	G	L	P	I	G	Q	F	G	C	I	Y	L	A	D	M	N	S	S	E	S	V	G	S	D	A	P	C	V	V	K	V	E	P	S	D	N	G	P	L	F	T	E	L	K	F	Y	Q
Template Known Secondary structure							T	T											.													S	S				T	T		S								T	T
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
					272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.						.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure		.	.	.																												.	.	.	.	.
Query SS confidence		.	.	.																												.	.	.	.	.
Query Sequence		.	.	.	P	E	A	F	L	G	E	A	N	V	M	K	T	L	Q	H	E	R	L	V	R	L	Y	A	V	V	T	.	.	.	.	.	R	E	P	I	Y	I	V	T	E	Y	M	A	R	G	C	L	L	D	F	L	K	T	D	E	G
Query Conservation		.	.	.																												.	.	.	.	.
Alig confidence		.	.	.																												.	.	.	.	.												.												.
Template Conservation																																																.												.
Template Sequence		R	A	A	K	P	E	Q	I	Q	K	W	I	R	T	R	K	L	K	Y	L	G	V	P	K	Y	W	G	S	G	L	H	D	K	N	G	K	S	Y	R	F	M	I	M	D	R	F	.	G	S	D	L	Q	K	I	Y	E	A	N	.	A
Template Known Secondary structure																T	T		S				S												T	T												.											T	.	T
Template Predicted Secondary structure																																																.												.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.		.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		S	R	L	S	L	P	R	L	I	D	M	S	A	Q	V	A	E	G	M	A	Y	I	E	R	M	N	S	I	H	R	D	L	R	A	A	N	I	L	V	S	E	.	.	T	L	C	C	K	I	A	D	F	G	L	A	R	I	I	D	S
Query Conservation																																											.	.
Alig confidence																																											.	.
Template Conservation
Template Sequence		K	R	F	S	R	K	T	V	L	Q	L	S	L	R	I	L	D	I	L	E	Y	I	H	E	H	E	Y	V	H	G	D	I	K	A	S	N	L	L	L	N	Y	K	N	P	D	Q	V	Y	L	V	D	Y	G	L	A	Y	R	Y	C	P
Template Known Secondary structure		S																								T	T								G	G	G					S	S		T	T								T	T				S	S	G
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390								.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.
Query Sequence		E	Y	T	A	Q	E	G	A	K	.	.	.	.	.	.	.	F	P	I	K	W	T	A	P	E	A	I	H	F	G	V	F	T	I	K	A	D	V	W	S	F	G	V	L	L	M	E	I	V	T	Y	G	R	V	P	Y	P	G	M	S
Query Conservation											.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																																			.
Template Conservation																																																				.
Template Sequence		E	G	V	H	K	A	Y	A	A	D	P	K	R	C	H	D	G	T	I	E	F	T	S	I	D	A	H	N	G	V	A	P	S	R	R	G	D	L	E	I	L	G	Y	C	M	I	Q	W	L	T	.	G	H	L	P	W	E	D	N	L
Template Known Secondary structure		G	G					S	S			S	S							T	T	T							T	T																						.	S			T	T	G	G	G	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.											.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.
Query Sequence		N	P	E	V	I	R	S	L	E	H	G	Y	R	M	.	.	.	.	.	.	.	.	.	.	P	C	P	E	T	C	P	P	E	L	Y	N	D	I	I	T	E	C	W	R	G	R	P	E	E	R	P	T	F	E	F	L	Q	S	V	L
Query Conservation																.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																				.
Template Sequence		K	D	P	K	Y	V	R	D	S	K	I	R	Y	R	E	N	I	A	S	L	M	D	K	C	F	P	A	A	N	A	P	G	E	I	.	A	K	Y	M	E	T	V	K	L	L	D	Y	T	E	K	P	L	Y	E	N	L	R	D	I	L
Template Known Secondary structure		T																								S		T	T							.									T			T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	F	Y	T	A	T	E	G	Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	G	L	K	A	I	G	S	K	D
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D