Job Description P16277 Confidence 100.00% Date Tue Jul 30 13:14:40 BST 2013 Rank 305 Aligned Residues 222 % Identity 26% Template c3kn5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:ribosomal protein s6 kinase alpha-5; PDBTitle: crystal structure of the c-terminal kinase domain of msk1 in complex2 with amp-pnp Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		232	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																	.																																	.
Query SS confidence									.	.	.																	.																																	.
Query Sequence		R	Q	S	L	K	L	V	.	.	.	R	K	L	G	S	G	Q	F	G	E	V	W	M	G	Y	Y	.	K	N	N	M	K	V	A	I	K	T	L	K	E	G	T	M	S	P	E	A	F	L	G	E	A	N	V	M	K	T	L	Q	.
Query Conservation									.	.	.																	.																																	.
Alig confidence									.	.	.																	.														.	.																		.
Template Conservation																																										.	.
Template Sequence		Y	Q	H	Y	D	L	D	L	K	D	K	P	L	G	E	G	S	F	S	I	C	R	K	C	V	H	K	K	S	N	Q	A	F	A	V	K	I	I	S	K	.	.	R	M	E	A	N	T	Q	K	E	I	T	A	L	K	L	C	E	G
Template Known Secondary structure									S	S	S			S	B			T	T									T	T	T	T										G	.	.	G	G														T	T	T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.			460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		H	E	R	L	V	R	L	Y	A	V	V	T	R	E	P	.	I	Y	I	V	T	E	Y	M	A	R	G	C	L	L	D	F	L	K	T	D	E	G	S	R	L	S	L	P	R	L	I	D	M	S	A	Q	V	A	E	G	M	A	Y	I
Query Conservation																	.
Alig confidence																	.																						.	.
Template Conservation																																							.	.
Template Sequence		H	P	N	I	V	K	L	H	E	V	F	H	D	Q	L	H	T	F	L	V	M	E	L	L	N	G	G	E	L	F	E	R	I	K	K	K	K	.	.	H	F	S	E	T	E	A	S	Y	I	M	R	K	L	V	S	A	V	S	H	M
Template Known Secondary structure			T	T	B										S	S											S		B							T		S	.	.			B
Template Predicted Secondary structure																																							.	.
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.			.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	M	N	S	I	H	R	D	L	R	A	A	N	I	L	V	S	E	T	L	C	C	K	I	A	D	F	G	L	A	R	I	I	D	S	E	Y	T	A	Q	E	G	A	K	F	P	I	K	W	T	A	P	E	A	I	H	F	G	V
Query Conservation
Alig confidence																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	D	V	G	V	V	H	R	D	L	K	P	E	N	L	L	F	.	T	D	L	E	I	K	I	I	D	F	G	F	A	R	L	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	G
Template Known Secondary structure				T	T								G	G	G				.											T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.		.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.																							570	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.								.	.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.														.	.	.
Query SS confidence																															.	.	.	.	.	.	.														.	.	.
Query Sequence		F	T	I	K	A	D	V	W	S	F	G	V	L	L	M	E	I	V	T	Y	G	R	V	P	Y	P	G	M	S	.	.	.	.	.	.	.	N	P	E	V	I	R	S	L	E	H	G	Y	R	.	.	.	M	P	C	P	E	T	C	P
Query Conservation																															.	.	.	.	.	.	.														.	.	.
Alig confidence																					.										.	.	.	.	.	.	.														.	.	.
Template Conservation																					.
Template Sequence		Y	D	E	S	C	D	L	W	S	L	G	V	I	L	Y	T	M	L	S	.	G	Q	V	P	F	Q	S	H	D	R	S	L	T	C	T	S	A	V	E	I	M	K	K	I	K	K	G	D	F	S	F	E	G	E	A	W	K	N	V	S
Template Known Secondary structure				T																	.	S			T	T			S	S		S	S															T						S	T	T	T	S	S
Template Predicted Secondary structure																					.
Template SS confidence
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.		.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	L	Y	N	D	I	I	T	E	C	W	R	G	R	P	E	E	R	P	T	F	E	F	L	Q	S
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		Q	E	A	.	K	D	L	I	Q	G	L	L	T	V	D	P	N	K	R	L	K	M	S	G	L	R	Y
Template Known Secondary structure					.											S	S	S									T	T
Template Predicted Secondary structure					.
Template SS confidence
		658	.	660		.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D