Job Description P16277 Confidence 100.00% Date Tue Jul 30 13:14:40 BST 2013 Rank 229 Aligned Residues 259 % Identity 17% Template c2v62A_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase vrk2; PDBTitle: structure of vaccinia-related kinase 2 Resolution 1.7 Å

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		237	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.															.	.	.	.
Predicted Secondary structure									.	.	.	.												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	R	K	L	G	S	.	.	.	.	G	Q	F	G	E	V	W	M	G	Y	Y	.	K	N	N	M	K	V	A	I	K	T	L	K	E	G	T	M	S	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	L	G
Query Conservation									.	.	.	.												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	D	M	E	G	N	Q	W	V	L	G	K	K	I	L	I	Y	L	A	F	P	T	N	K	P	E	K	D	A	R	H	V	V	K	V	E	Y	Q	E	G	P	L	F	S	E	L	K	F	Y	Q	R	V	A	K	K	D	C	I	K
Template Known Secondary structure					T	T	S																	S	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		E	A	N	V	M	K	T	L	Q	H	E	R	L	V	R	L	Y	A	V	V	T	R	E	P	.	.	.	.	.	I	Y	I	V	T	E	Y	M	A	R	G	C	L	L	D	F	L	K	T	D	E	G	S	R	L	S	L	P	R	L	I
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.									.													.	.
Template Conservation																																							.													.	.
Template Sequence		K	W	I	E	R	K	Q	L	D	Y	L	G	I	P	L	F	Y	G	S	G	L	T	E	F	K	G	R	S	Y	R	F	M	V	M	E	R	L	.	G	I	D	L	Q	K	I	S	G	Q	N	G	.	.	T	F	K	K	S	T	V	L
Template Known Secondary structure								T		S															S	S	S												.									B	G	G	G	.	.	B
Template Predicted Secondary structure																																							.													.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																		.	.	.	.
Query SS confidence																																							.	.																		.	.	.	.
Query Sequence		D	M	S	A	Q	V	A	E	G	M	A	Y	I	E	R	M	N	S	I	H	R	D	L	R	A	A	N	I	L	V	S	E	T	L	C	C	K	.	.	I	A	D	F	G	L	A	R	I	I	D	S	E	Y	T	A	Q	.	.	.	.
Query Conservation																																							.	.																		.	.	.	.
Alig confidence																																							.	.																		.	.	.	.
Template Conservation
Template Sequence		Q	L	G	I	R	M	L	D	V	L	E	Y	I	H	E	N	E	Y	V	H	G	D	I	K	A	A	N	L	L	L	G	Y	K	N	P	D	Q	V	Y	L	A	D	Y	G	L	S	Y	R	Y	C	P	N	G	N	H	K	Q	Y	Q	E
Template Known Secondary structure																	T	T				S			S	G	G	G					S	S	S	T	T	S							T	T				S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
					387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	E	G	A	K	F	P	I	K	W	T	A	P	E	A	I	H	F	G	V	F	T	I	K	A	D	V	W	S	F	G	V	L	L	M	E	I	V	T	Y	G	R	V	P	Y	P	G	M	S	N	.	.	.	.	.	.	.	.
Query Conservation		.	.	.																																																		.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																							.											.	.	.	.	.	.	.	.
Template Conservation																																											.
Template Sequence		N	P	R	K	G	H	N	G	T	I	E	F	T	S	L	D	A	H	K	G	V	A	L	S	R	R	S	D	V	E	I	L	G	Y	C	M	L	R	W	L	C	.	G	K	L	P	W	E	Q	N	L	K	D	P	V	A	V	Q	T	A
Template Known Secondary structure			G	G	G		S		S		T	T	T								T																						.	S	S		T	T	G	G	G	T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
			436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure		.																																																											.
Query SS confidence		.																																																											.
Query Sequence		.	P	E	V	I	R	S	L	E	H	G	Y	R	M	P	C	P	E	T	C	P	P	E	L	Y	N	D	I	I	T	E	C	W	R	G	R	P	E	E	R	P	T	F	E	F	L	Q	S	V	L	E	D	F	Y	T	A	T	E	G	.
Query Conservation		.																																																											.
Alig confidence		.																																																											.
Template Conservation
Template Sequence		K	T	N	L	L	D	E	L	P	Q	S	V	L	K	W	A	P	S	G	S	S	C	C	E	I	A	Q	F	L	V	C	A	H	S	L	A	Y	D	E	K	P	N	Y	Q	A	L	K	K	I	L	N	P	H	G	I	P	L	G	P	L
Template Known Secondary structure								T	T	T							S		T	T	S														T			T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		494	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	E	L	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	F	S	T	K	G
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D