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Job DescriptionP97504
Confidence100.00%DateWed Jul 10 14:16:15 BST 2013
Rank157Aligned Residues250
% Identity24%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   388.390.........400.........410... ......420.........430.........440... ..
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Query Sequence  LKREEITLLKELGNGQFGVVQLGQWK. GQYDVAVKMIKEGAMSEDEFFQEAQTMMKL. SH
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNIDWVQTEKHVFEQASNH
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GGG
SSTTTTGGGT


TT
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   239240.........250.........260.........270.........280.........290........
 
   446...450.........460.........470.........480.........490.........500.....
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Query Sequence  PKLVKFYGVCSKKYPIYIVTEYITNGCLLNYLKSHGKGLESCQLLEMCYDVCEGMAFLES
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Template Sequence  PFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRK. LPEEHARFYSAEISLALNYLHE
Template Known Secondary structure  TTB


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TT
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   303......310.........320.........330......... 340.........350.........360.
 
   506...510.........520.........530.........540.........550.........560.....
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Query Sequence  HQFIHRDLAARNCLVDSDLSVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKY
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Template Sequence  RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST. FCGTPNYIAPEILRGEDY
Template Known Secondary structure  TT
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GGG
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TT
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S
GGG

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   362.......370.........380.........390.........400.. .......410.........420
 
   566...570.........580.........590... ......600.........610.........620...
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Query Sequence  SSKSDVWAFGILMWEVFSLGKQPYDLYD. . NSEVVVKVSQGHRLYRPQLASDTIYQIMYS
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Template Sequence  GFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASVLKS
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T.SS
SSTTTT








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   421........430........ .440.........450.........460.........470.........
 
   624.....630... ......640
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Query Sequence  CWHELPEKRP. . . . . . TFQQLLS
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Template Sequence  FLNKDPKERLGCHPQTGFADIQG
Template Known Secondary structure  T
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TTTSTT
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   486...490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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