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Job DescriptionP97504
Confidence100.00%DateWed Jul 10 14:16:15 BST 2013
Rank43Aligned Residues246
% Identity22%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   391........400.........410.........420.........430.. .......440.......
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Query Sequence  EEITLLKELGNGQFGVVQLGQWKGQYDVAVKMIKEGAMSEDE. . . FFQEAQTMMKLSHPK
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Template Sequence  EEYQLFEELGKGSVVRRCVKVL. AGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPN
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TT.TTS
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BTT
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   11........20.........30.. .......40.........50.........60.........
 
   448.450.........460.........470.........480.........490.........500.......
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Query Sequence  LVKFYGVCSKKYPIYIVTEYITNGCLLNYLKSHGKGLESCQLLEMCYDVCEGMAFLESHQ
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Template Sequence  IVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREY. YSEADASHCIQQILEAVLHCHQMG
Template Known Secondary structure  B


SS


B

B
S
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TT
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   72.......80.........90.........100...... ...110.........120.........130
 
   508.510.........520..... ....530.........540.........550.........560....
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Query Sequence  FIHRDLAARNCLVDSDLS. . . VKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFK
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Template Sequence  VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFG. FAGTPGYLSPEVLRKDP
Template Known Secondary structure 
B



SSTTSBSSTT




SS
B


TT

B


.S
S
GGG

TT

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   131........140.........150.........160.........170.. .......180.........
 
   565....570.........580.........590.........600...... ...610.........620.
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Query Sequence  YSSKSDVWAFGILMWEVFSLGKQPYDLYDNSEVVVKVSQGHR. . . LYRPQLASDTIYQIM
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Template Sequence  YGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLI
Template Known Secondary structure  B
T.SS
S


SST




TTTTTTS
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   190.........200........ .210.........220.........230.........240........
 
   622.......630.........640
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Query Sequence  YSCWHELPEKRPTFQQLLS
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Template Sequence  NKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   249250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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