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Job DescriptionP97504
Confidence100.00%DateWed Jul 10 14:16:15 BST 2013
Rank147Aligned Residues245
% Identity25%Templatec3ku2A_
PDB info PDB header:transferaseChain: A: PDB Molecule:calmodulin-domain protein kinase 1; PDBTitle: crystal structure of inactivated form of cdpk1 from toxoplasma gondii,2 tgme49.101440
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   391........400.........410... ......420.... .....430.........440.....
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Query Sequence  EEITLLKELGNGQFGVVQLGQWK. GQYDVAVKMIK. . . . EGAMSEDEFFQEAQTMMKLSH
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Template Sequence  DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDH
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   4950.........60.........70.........80.........90.........100........
 
   446...450.........460.........470.........480.........490.........500.....
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Query Sequence  PKLVKFYGVCSKKYPIYIVTEYITNGCLLNYLKSHGKGLESCQLLEMCYDVCEGMAFLES
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Template Sequence  PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKR. FSEVDAARIIRQVLSGITYMHK
Template Known Secondary structure  TTB


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   109110.........120.........130.........140..... ....150.........160.......
 
   506...510.........520 .........530.........540.........550.........560..
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Query Sequence  HQFIHRDLAARNCLV. . . DSDLSVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHY
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Template Sequence  NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDK. . IGTAYYIAPEVLH.
Template Known Secondary structure  TT


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   168.170.........180.........190.........200.........210. ........220....
 
   563......570.........580.........590.........600.... .....610.........
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Query Sequence  FKYSSKSDVWAFGILMWEVFSLGKQPYDLYDNSEVVVKVSQG. . . HRLYRPQLASDTIYQ
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Template Sequence  GTYDEKCDVWSTGVILYILLS. GCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKD
Template Known Secondary structure  S


T.SS
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SGGGGGS
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   225....230.........240..... ....250.........260.........270.........280...
 
   620.........630.........640
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Query Sequence  IMYSCWHELPEKRPTFQQLLS
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Template Sequence  LIRKMLTYVPSMRISARDALD
Template Known Secondary structure  T
SSTTTS

T
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   284.....290.........300....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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