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Job DescriptionP97504
Confidence100.00%DateWed Jul 10 14:16:15 BST 2013
Rank86Aligned Residues252
% Identity21%Templatec2vd5A_
PDB info PDB header:transferaseChain: A: PDB Molecule:dmpk protein; PDBTitle: structure of human myotonic dystrophy protein kinase in2 complex with the bisindoylmaleide inhibitor bim viii
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   387..390.........400.........410... ......420.........430.. .......440.
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Query Sequence  ELKREEITLLKELGNGQFGVVQLGQWK. GQYDVAVKMIKEGAMSEDE. . . . FFQEAQTMM
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Template Sequence  RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLV
Template Known Secondary structure  S

GGG
SS
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GGG

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   65....70.........80.........90.........100.........110.........120....
 
   442.......450.........460.........470.........480.........490.........500.
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Query Sequence  KLSHPKLVKFYGVCSKKYPIYIVTEYITNGCLLNYLKSHGKGLESCQLLEMCYDVCEGMA
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Template Sequence  NGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAID
Template Known Secondary structure  S
TTTB


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S
BSS


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   125....130.........140.........150.........160.........170.........180....
 
   502.......510.........520.........530.........540.........550.........560
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Query Sequence  FLESHQFIHRDLAARNCLVDSDLSVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVF.
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Template Sequence  SVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQ
Template Known Secondary structure  TT



SGGG
TTS



TT


TTS

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S
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   185....190.........200.........210.........220.........230.........240....
 
   561........570.........580.........590.........600.........610....
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Query Sequence  . . . . . . HYFKYSSKSDVWAFGILMWEVFSLGKQPYDLYDNSEVVVKVSQGHRLYRPQLAS
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Template Sequence  AVGGGPGTGSYGPECDWWALGVFAYEMFY. GQTPFYADSTAETYGKIVHYKEHLSLPGVP
Template Known Secondary structure  T
TT
S
T.SS
TT

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   245....250.........260.........270... ......280.........290.........300...
 
   615....620.........630.. .......640
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Query Sequence  DTIYQIMYSCWHELPEKR. . . PTFQQLLS
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Template Sequence  EEARDFIQRLLC. PPETRLGRGGAGDFRT
Template Known Secondary structure  TTSS.
GGG
TTTTTT
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   308.310......... 320.........330.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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