Job Description P97504 Confidence 100.00% Date Wed Jul 10 14:16:15 BST 2013 Rank 65 Aligned Residues 244 % Identity 21% Template c2a1aB_ PDB info PDB header:protein synthesis/transferase Chain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex Resolution 2.80 Å

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		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		E	E	I	T	L	L	K	E	L	G	N	G	Q	F	G	V	V	Q	L	G	Q	W	K	.	G	Q	Y	D	V	A	V	K	M	I	K	E	G	A	M	S	E	D	E	F	F	Q	E	A	Q	T	M	M	K	L	S	H	P	K	L	V
Query Conservation																									.
Alig confidence																									.															.	.	.
Template Conservation																																								.	.	.
Template Sequence		M	D	F	K	E	I	E	L	I	G	S	G	G	F	G	Q	V	F	K	A	K	H	R	I	D	G	K	T	Y	V	I	K	R	V	K	Y	N	N	.	.	.	E	K	A	E	R	E	V	K	A	L	A	K	L	D	H	V	N	I	V
Template Known Secondary structure														S	S									S	S	S													S	.	.	.	G	G	G	G							T	T				T	T	B
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		450	.	.	.	.	.	.	.													.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		K	F	Y	G	V	C	S	K	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	P	I	Y	I	V	T	E	Y	I	T	N	G	C	L	L	N	Y	L	K	S	H	.	G	K	G	L	E	S	C	Q	L	L	E	M	C	Y	D	V
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		H	Y	N	G	C	W	D	G	F	D	Y	D	P	E	T	S	S	R	S	K	T	K	C	L	F	I	Q	M	E	F	C	D	K	G	T	L	E	Q	W	I	E	K	R	R	G	E	K	L	D	K	V	L	A	L	E	L	F	E	Q	I
Template Known Secondary structure														T	T																		T	T		B									T	T	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	G	M	A	F	L	E	S	H	Q	F	I	H	R	D	L	A	A	R	N	C	L	V	D	S	D	L	S	V	K	V	S	D	F	G	M	T	R	Y	V	L	D	D	Q	Y	V	S	S	V	G	T	K	F	P	V	K	W	S	A
Query Conservation
Alig confidence																																																							.	.	.
Template Conservation																																																							.	.	.
Template Sequence		T	K	G	V	D	Y	I	H	S	K	K	L	I	N	R	D	L	K	P	S	N	I	F	L	V	D	T	K	Q	V	K	I	G	D	F	G	L	V	T	S	L	K	N	D	G	K	R	R	S	K	G	T	L	.	.	.	R	Y	M	S
Template Known Secondary structure											T	T				T	T		S	G	G	G						T	T								T	T				S	S			S						S			.	.	.	T	T	S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.				.	.	.	.
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	V	F	H	Y	F	K	Y	S	S	K	S	D	V	W	A	F	G	I	L	M	W	E	V	F	S	L	G	K	Q	P	Y	D	L	Y	D	N	S	E	V	V	V	K	V	S	Q	G	H	R	L	Y	R	P	Q	L	A	S	D	T
Query Conservation
Alig confidence																													.						.	.	.	.	.
Template Conservation																													.						.	.	.	.	.
Template Sequence		P	E	Q	I	S	S	Q	D	Y	G	K	E	V	D	L	Y	A	L	G	L	I	L	A	E	L	L	H	.	V	C	D	T	A	.	.	.	.	.	F	E	T	S	K	F	F	T	D	L	R	D	G	I	I	S	D	I	F	D	K	K
Template Known Secondary structure						S		S				T																S	.			S	S		.	.	.	.	.												T	T				T	T	S
Template Predicted Secondary structure																													.						.	.	.	.	.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.						.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	Q	I	M	Y	S	C	W	H	E	L	P	E	K	R	P	T	F	Q	Q	L	L	S	A	I	E	P	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	T	L	L	Q	K	L	L	S	K	K	P	E	D	R	P	N	T	S	E	I	L	R	T	L	T	V	W	K
Template Known Secondary structure										T		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D