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Job DescriptionP25911
Confidence100.00%DateWed Jul 10 14:04:52 BST 2013
Rank51Aligned Residues247
% Identity21%Templatec4fijA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: catalytic domain of human pak4
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   243......250.........260......... 270....... ..280.........290.........300
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Query Sequence  PRESIKLVKKLGAGQFGEVWMGYYNNS. TKVAVKTL. KPGTMSVQAFLEEANLMKTLQHD
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Template Sequence  PRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHE
Template Known Secondary structure  GGGT
SSSTTT

STT
SSGGG


T
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   317..320.........330.........340.........350.........360.........370......
 
   301........310.........320.........330.........340.........350.........360
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Query Sequence  KLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER
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Template Sequence  NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT. . . RMNEEQIAAVCLAVLQALSVLHA
Template Known Secondary structure  TB

TT


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   377..380.........390.........400.........410 .........420.........430...
 
   361........370.........380.........390.........400.........410.........420
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Query Sequence  KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCF
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Template Sequence  QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKL. . VGTPYWMAPELISRLPY
Template Known Secondary structure  TT



SGGG
TT




TT


SS


B

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S
GGG

TT

B
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   434.....440.........450.........460.........470.... .....480.........490.
 
   421........430.........440.........450......... 460.........470........
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Query Sequence  TIKSDVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQG. . YRMPRMENCPDELYDIMKM
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Template Sequence  GPEVDIWSLGIMVIEMVD. GEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDR
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T.SS
TTTTS
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TTGGGS
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   493......500.........510 .........520.........530.........540.........550.
 
   479480.........490.....
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Query Sequence  CWKEKAEERPTFDYLQS
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Template Sequence  LLVRDPAQRATAAELLK
Template Known Secondary structure  S
SSTTTS

TT
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   552.......560........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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