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Job DescriptionP25911
Confidence100.00%DateWed Jul 10 14:04:52 BST 2013
Rank164Aligned Residues250
% Identity20%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   242.......250.........260.........270. ........280.........290....... ..
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Query Sequence  IPRESIKLVKKLGAGQFGEVWMGYYNNSTK. VAVKTLKPGTMSVQAFLEEANLMKTL. QH
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNIDWVQTEKHVFEQASNH
Template Known Secondary structure 

GGG
SSTTTTGGGT


TT
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   239240.........250.........260.........270.........280.........290........
 
   300.........310.........320.........330.........340.........350.........
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Query Sequence  DKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE
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Template Sequence  PFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ. . RKLPEEHARFYSAEISLALNYLH
Template Known Secondary structure  TTB


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TT
B..SS

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   303......310.........320.........330....... ..340.........350.........360
 
   360.........370.........380.........390.........400.........410.........
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Query Sequence  RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGC
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Template Sequence  ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPN. YIAPEILRGED
Template Known Secondary structure  TT
B




GGG
TTS



TT
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TT

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GG.G

TT

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   361........370.........380.........390.........400........ .410.........
 
   420.........430.........440........ .450.........460.........470.......
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Query Sequence  FTIKSDVWSFGILLYEIVTYGKIPYPGRT. . NADVMSALSQGYRMPRMENCPDELYDIMK
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Template Sequence  YGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASVLK
Template Known Secondary structure  B
T.SS
SSTTTT








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   420.........430........ .440.........450.........460.........470........
 
   478.480........ .490.....
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Query Sequence  MCWKEKAEERP. . . . . . TFDYLQS
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Template Sequence  SFLNKDPKERLGCHPQTGFADIQG
Template Known Secondary structure  T
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TTTSTT
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   485....490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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