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Job DescriptionP25911
Confidence100.00%DateWed Jul 10 14:04:52 BST 2013
Rank55Aligned Residues247
% Identity21%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   244.....250.........260.........270.........280...... ...290.........300
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Query Sequence  RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA. . . FLEEANLMKTLQHD
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Template Sequence  TEEYQLFEELGKGSVVRRCVKVLAGQ. EYAAMIINTKKLSARDHQKLEREARICRLLKHP
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TTTT.S
S


BT
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   10.........20.........30..... ....40.........50.........60........
 
   301........310.........320.........330.........340.........350.........360
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Query Sequence  KLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER
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Template Sequence  NIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAR. . EYYSEADASHCIQQILEAVLHCHQ
Template Known Secondary structure  TB


SS


B

B
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   71........80.........90.........100.... .....110.........120........
 
   361........370.........380 .........390.........400.........410.......
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Query Sequence  KNYIHRDLRAANVLVSESLM. . . CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINF
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Template Sequence  MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPG. YLSPEVLRK
Template Known Secondary structure  TT
B



SSTTSBSSTT




SS
B


TT

B


S
S
GG.G

TT
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   129130.........140.........150.........160.........170........ .180.......
 
   418.420.........430.........440.........450.........460. ........470....
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Query Sequence  GCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYR. . . MPRMENCPDELYD
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Template Sequence  DPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKD
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B
T.SS
S


SST




TTTTTTS
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   188.190.........200........ .210.........220.........230.........240......
 
   475....480.........490.....
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Query Sequence  IMKMCWKEKAEERPTFDYLQS
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Template Sequence  LINKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   247..250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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