Job Description P25911 Confidence 100.00% Date Wed Jul 10 14:04:52 BST 2013 Rank 273 Aligned Residues 237 % Identity 19% Template c3rgfA_ PDB info PDB header:transferase,transcription Chain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc Resolution 2.20 Å

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		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		P	R	E	S	I	K	L	V	K	K	L	G	A	G	Q	F	G	E	V	W	M	G	Y	Y	N	.	.	.	N	S	T	K	V	A	V	K	T	L	K	P	G	T	M	S	V	Q	A	F	L	E	E	A	N	L	M	K	T	L	Q	H
Query Conservation																											.	.	.
Alig confidence																											.	.	.																		.
Template Conservation																																															.
Template Sequence		E	R	E	R	V	E	D	L	F	E	Y	E	G	C	K	V	G	H	V	Y	K	A	K	R	K	D	G	K	D	D	K	D	Y	A	L	K	Q	I	E	G	T	G	I	S	M	.	S	A	C	R	E	I	A	L	L	R	E	L	K	H
Template Known Secondary structure													S	S												S	S	S	S											S	S	S	S				.
Template Predicted Secondary structure																																															.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70
		300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		D	K	L	V	R	L	Y	A	V	.	.	V	T	K	E	E	P	I	Y	I	I	T	E	F	M	A	K	G	S	L	L	D	F	L	K	S	D	E	G	G	K	V	L	L	P	K	L	I	D	F	S	A	Q	I	A	E	G	M	A	Y
Query Conservation											.	.
Alig confidence											.	.																									.
Template Conservation																																					.
Template Sequence		P	N	V	I	S	L	Q	K	V	F	L	S	H	A	D	R	K	V	W	L	L	F	D	Y	A	E	H	D	L	W	H	I	I	K	F	.	H	R	A	S	K	L	P	R	G	M	V	K	S	L	L	Y	Q	I	L	D	G	I	H	Y
Template Known Secondary structure		T	T	B										T	T	T	T										S										.
Template Predicted Secondary structure																																					.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		I	E	R	K	N	Y	I	H	R	D	L	R	A	A	N	V	L	V	S	E	S	L	.	.	.	.	M	C	K	I	A	D	F	G	L	A	R	V	I	E	D	N	E	Y	T	A	R	E	G	A	K	F	P	I	K	W	T	A	P	E
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	A	N	W	V	L	H	R	D	L	K	P	A	N	I	L	V	M	G	E	G	P	E	R	G	R	V	K	I	A	D	M	G	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	T	F	W	Y	R	A	P	E	L
Template Known Secondary structure					T	T								G	G	G						S	S	T	T	T	T							T	T			.	.	.	.	.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.														.	.	180	.	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.								.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																					.	.	.	.	.	.	.														.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.														.	.	.	.	.
Query Sequence		A	I	N	F	G	C	F	T	I	K	S	D	V	W	S	F	G	I	L	L	Y	E	I	V	T	Y	G	K	I	P	Y	P	G	R	T	.	.	.	.	.	.	.	N	A	D	V	M	S	A	L	S	Q	G	Y	R	.	.	.	.	.
Query Conservation																																					.	.	.	.	.	.	.														.	.	.	.	.
Alig confidence																											.										.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																											.
Template Sequence		L	L	G	A	R	H	Y	T	K	A	I	D	I	W	A	I	G	C	I	F	A	E	L	L	T	.	S	E	P	I	F	H	C	R	Q	N	P	Y	H	H	D	Q	L	D	R	I	F	N	V	M	G	F	P	A	D	K	D	W	E	D
Template Known Secondary structure			T	T			S																				.	S	S		T	T																								T	T	T		G	G
Template Predicted Secondary structure																											.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
																														462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	R	M	E	N	C	P	D	E	L	Y	D	I	M	K	M	C	W	K	E	K	A	E	E	R	P	T	F	D	Y	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	K	M	P	E	H	S	T	L	M	K	D	F	R	R	N	T	Y	T	N	C	S	L	I	K	Y	M	E	K	H	K	V	K	P	D	S	K	A	F	H	L	L	Q	K	L	L	T	M	D	P	I	K	R	I	T	S	E	Q	A
Template Known Secondary structure		G	G	G	S	T	T										G	G	G	G	T	T									T	T	T			T	T	S										S		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		494	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		330	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D