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Job DescriptionP42682
Confidence100.00%DateTue Jul 30 13:16:14 BST 2013
Rank112Aligned Residues249
% Identity42%Templatec4hzsA_
PDB info PDB header:transferaseChain: A: PDB Molecule:activated cdc42 kinase 1; PDBTitle: crystal structure of ack1 kinase domain with c-terminal sh3 domain
Resolution3.23 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   266...270.........280.........290.... .....300....... ..310.......
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Query Sequence  IDPSELAFVKEIGSGQFGVVHLGEWRAHI. . . . PVAIKAINEGSMS. . . . EEDFIEEAKV
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Template Sequence  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA
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GGG



B

TTS
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S
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   121........130.........140.........150.........160.........170.........180
 
   318.320.........330.........340.........350.........360.........370.......
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Query Sequence  MMKLSHSRLVQLYGVCIQQKPLYIVTEFMENGCLLDYLRERKGQLQKALLLSMCQDICEG
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Template Sequence  MHSLDHRNLIRLYGVVL. TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG
Template Known Secondary structure  T


TTB


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   181........190....... ..200.........210.........220.........230.........
 
   378.380.........390.........400.........410.........420.........430.......
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Query Sequence  MAYLERSCYIHRDLAARNCLVSSACVVKISDFGMARYVLDDEYISSSGAKFPVKWCPPEV
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Template Sequence  MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMR. . . . . . . . . . . ALPVPFAWCAPES
Template Known Secondary structure  TT


S

SGGGSSSS


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   240.........250.........260.........270..... ....280........
 
   438.440.........450.........460.........470......... 480.........490......
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Query Sequence  FHFNKYSSKSDVWSFGVLMWEVFTEGKMPFENKSNLQVVEAI. SQGFRLYRPHLAPMTIY
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Template Sequence  LKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIY
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TTT

TTTT

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   302.......310.........320.........330.........340.........350.........360.
 
   497..500.........510.........520......
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Query Sequence  RVMYSCWHESPKGRPTFAELLQVLTEIAET
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Template Sequence  NVMVQCWAHKPEDRPTFVALRDFLLEAQPT
Template Known Secondary structure  T
SSGGGS

T


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   362.......370.........380.........390.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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