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Job DescriptionP42682
Confidence100.00%DateTue Jul 30 13:16:14 BST 2013
Rank221Aligned Residues250
% Identity23%Templatec3hkoA_
PDB info PDB header:transferaseChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase with a kinase PDBTitle: crystal structure of a cdpk kinase domain from cryptosporidium parvum,2 cgd7_40
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   264.....270.........280.........290.. .......300... ......310.........
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Query Sequence  WEIDPSELAFVKEIGSGQFGVVHLGEWRA. HIPVAIKAINE. . . GSMSEEDFIEEAKVMM
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Template Sequence  LELQ. KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQKDVERIKTEVRLMK
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   4... ..10.........20.........30.........40.........50.........60..
 
   320.........330.........340.........350.....
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Query Sequence  KLSHSRLVQLYGVCIQQKPLYIVTEFMENGCLLDYL. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCP
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   66...70.........80.........90.........100.........110.........120.....
 
   356...360.........370.........380.........390.........400..
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Query Sequence  . . . . . . . . . . . . . RERKGQLQKALLLSMCQDICEGMAYLERSCYIHRDLAARNCLVSSAC
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Template Sequence  ECNEEAINGSIFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNK
Template Known Secondary structure  S




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   126...130.........140.........150.........160.........170.........180.....
 
   403......410.........420.........430........ .440.........450.........460
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Query Sequence  VVKISDFGMARYVLDDEYISSSGAKFPVKWCPPEVF. . HFNKYSSKSDVWSFGVLMWEVF
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Template Sequence  SFEIKLVDFG. . . LSKEFYKLNNGAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLL
Template Known Secondary structure  S




T...T
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   188.190....... ..200.........210.........220.........230.........240....
 
   461........470.........480.. .......490.........500.........510.......
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Query Sequence  TEGKMPFENKSNLQVVEAISQG. . . FRLYRPHLAPMTIYRVMYSCWHESPKGRPTFAELL
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Template Sequence  M. GAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRAL
Template Known Secondary structure  .SS
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   253 ......260.........270.........280.........290.........300.........310.
 
   518
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Query Sequence  Q
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Template Sequence  Q
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   312
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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