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Job DescriptionP42682
Confidence99.96%DateTue Jul 30 13:16:14 BST 2013
Rank324Aligned Residues172
% Identity16%Templatec3en9B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
Resolution2.67 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   274.....280.........290.........300.........310 .........320....
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Query Sequence  VKEIGSGQFGVVHLGEWRAHIPVAIKAINEGSMSEED. . . . . . . . . FIEEAKVMMKLSHS
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Template Sequence  VEVNWIGAEADIKRDSYLD. FDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDF
Template Known Secondary structure  S






STT.


TTS
GGGT
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   319320.........330....... ..340.........350.........360.........370.......
 
   325....330.........340.........350.........360.........370.........380....
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Query Sequence  RLVQLYGVCIQQKPLYIVTEFMENGCLLDYLRERKGQLQKALLLSMCQDICEGMAYLERS
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Template Sequence  GIPAPYIFDVDLDNKRIMMSYINGKLAKDVIEDN. . . . . . . . . LDIAYKIGEIVGKLHKN
Template Known Secondary structure  T




TTTT


SGGGTTTT
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   395....400.........410.........420........ .430.........440.....
 
   385....390.........400.........410.........420.........430.........440....
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Query Sequence  CYIHRDLAARNCLVSSACVVKISDFGMARYVLDDEYISSSGAKFPVKWCPPEVFHFNKYS
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Template Sequence  DVIHNDLTTSNFIFDKD. . LYIIDFGLGKISNLDEDKAVDL. . . . . . IVFKKAVLSTHHE
Template Known Secondary structure  T
S


GGGSSS..


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   446...450.........460.. .......470.........480.... .....490.......
 
   445....450.........460....
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Query Sequence  SKSDVWSFGVLMWEVFTEGK
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Template Sequence  KFDEIWERFLEGYKSVY. DR
Template Known Secondary structure  T
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   498.500.........510.... ..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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