Job Description P42682 Confidence 100.00% Date Tue Jul 30 13:16:14 BST 2013 Rank 19 Aligned Residues 264 % Identity 36% Template c2ivsA_ PDB info PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase receptor PDBTitle: crystal structure of non-phosphorylated ret tyrosine kinase2 domain Resolution 2.00 Å Model Dimensions (Å) X:61.837 Y:46.874 Z:40.418

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		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.							.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																	.	.	.	.	.	.													.	.
Query SS confidence																																	.	.	.	.	.	.													.	.
Query Sequence		Y	E	K	W	E	I	D	P	S	E	L	A	F	V	K	E	I	G	S	G	Q	F	G	V	V	H	L	G	E	W	R	.	.	.	.	.	.	A	H	I	P	V	A	I	K	A	I	N	E	.	.	G	S	M	S	E	E	D	F	I
Query Conservation																																	.	.	.	.	.	.													.	.
Alig confidence																																	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		D	P	K	W	E	F	P	R	K	N	L	V	L	G	K	T	L	G	E	G	E	F	G	K	V	V	K	A	T	A	F	H	L	K	G	R	A	G	Y	T	T	V	A	V	K	M	L	K	E	N	A	S	P	S	E	L	R	D	L	L
Template Known Secondary structure			T	T	T	B			G	G	G											S	S	S									T	G	G	G		S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.								360	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.
Query Sequence		E	E	A	K	V	M	M	K	L	S	H	S	R	L	V	Q	L	Y	G	V	C	I	Q	Q	K	P	L	Y	I	V	T	E	F	M	E	N	G	C	L	L	D	Y	L	R	E	R	K	.	.	.	.	.	.	.	G	Q	L	Q	K	A
Query Conservation																																																	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	F	N	V	L	K	Q	V	N	H	P	H	V	I	K	L	Y	G	A	C	S	Q	D	G	P	L	L	L	I	V	E	Y	A	K	Y	G	S	L	R	G	F	L	R	E	S	R	K	V	G	P	G	Y	L	R	A	L	T	M	G
Template Known Secondary structure								T	T				T	T	B									S	S	S	S									T	T		B								T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		L	L	L	S	M	C	Q	D	I	C	E	G	M	A	Y	L	E	R	S	C	Y	I	H	R	D	L	A	A	R	N	C	L	V	S	S	A	C	V	V	K	I	S	D	F	G	M	A	R	Y	.	V	L	D	D	E	Y	I	S	S	S
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		D	L	I	S	F	A	W	Q	I	S	Q	G	M	Q	Y	L	A	E	M	K	L	V	H	R	D	L	A	A	R	N	I	L	V	A	E	G	R	K	M	K	I	S	D	F	G	L	S	R	D	V	Y	E	E	D	S	Y	V	K	R	S
Template Known Secondary structure																				T	T							S	G	G	G					T	T	T								T	T					T	T	T	S					S	S
Template Predicted Secondary structure
Template SS confidence
		850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	K	F	P	V	K	W	C	P	P	E	V	F	H	F	N	K	Y	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	V	F	T	E	G	K	M	P	F	E	N	K	S	N	L	Q	V	V	E	A	I	S	Q	G	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	R	I	P	V	K	W	M	A	I	E	S	L	F	D	H	I	Y	T	T	Q	S	D	V	W	S	F	G	V	L	L	W	E	I	V	T	L	G	G	N	P	Y	P	G	I	P	P	E	R	L	F	N	L	L	K	T	G	H	R
Template Known Secondary structure					S		G	G	G																													T	T	S			S	S	T	T			G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	R	P	H	L	A	P	M	T	I	Y	R	V	M	Y	S	C	W	H	E	S	P	K	G	R	P	T	F	A	E	L	L	Q	V	L	T	E	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	R	P	D	N	C	S	E	E	M	Y	R	L	M	L	Q	C	W	K	Q	E	P	D	K	R	P	V	F	A	D	I	S	K	D	L	E	K	M	M
Template Known Secondary structure						T	T													T		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D